Click here to switch to the map view.

The map label for this gene is syrM [H]

Identifier: 83718511

GI number: 83718511

Start: 1136630

End: 1137457

Strand: Reverse

Name: syrM [H]

Synonym: BTH_I0998

Alternate gene names: 83718511

Gene position: 1137457-1136630 (Counterclockwise)

Preceding gene: 83719575

Following gene: 83720748

Centisome position: 29.86

GC content: 74.76

Gene sequence:

>828_bases
ATGGCGGGCCTCGATCTCGTGCGGCGCGTCGCGGCGCATGCGCCGGGCGTGCGCCTCGCGTTCCGCAATGTGCCCGCCAA
CGCCGCGGGCGCACTGCTCGAGCGCGGCGAGGCCGATCTGCTGATCGCAGCCGATTTCGCGGTGCCGCGCGCGACGATCG
CACGCCCGCTGCTGCGCGAGCGCTACGTGATGGCGCAGCGCCACGGGCATCCGCGCGGCCTCGCGCCGCCCGATCTCGAC
GCGTACTGCGCGCTTCGCCACGTGATCGTGTCGGGCGACGGCGGCGGCCTGCGCGGCTTCATGGACGAACGCCTGCACGC
GCTCGGACGCTCGCGGGTCGTCGCGGTATCGGTGCAGCAGTACCATCTCGCGCCGCTCGTGCTCGACGCAACCGACTATG
TGTGCGCGCTGCCCGAGCGCTTCCTGCTGCGCTTCGCCGACCGGCTCGATCTGCTGCCGCTGCCCATCGAAGTCGACGGC
TTCACGCTCTCCGCCGCGTGGCACCCGCGGCTGCACGCCGATCCCGCGCATCGCTGGCTGCGCGGCGCGCTGTTCGCCGC
CGTGGGCGCACGCACGGAAGACGGGCCGGACATGGCCCCGGCTCGGGCTTCGAGCGACGGCGCGCGCGCGCGGCATGCGG
CGGGCCGCGCACGGACAACGCGCCGGCCCCCGAGCCGGCCGCGCCATCGGACGACGACACGCACGCGGCATGAGCGCGCG
CGGCATACGCGAAGCGGCGCGCCGGCACCGTGCGCAGCCCAAGAGCGGCGGGCTTCGGCTGTCGCGGCGCCCGCTGCTGT
CACAAACACGTCGCCTGCTTCGTCTTGA

Upstream 100 bases:

>100_bases
TGCGCGAGTTGCAGGCCGCGCGCTGCGTCACGGCGCCGCGTTCGATCCCGCGACCGACGAACGCACGTTCCAGATCGTCG
CGAGCGACAACGGCTTCGTG

Downstream 100 bases:

>100_bases
TCGTTCGAACCGTCAGTTATTCAAGCAGGCCCTCAAGCACGCTTTCGAGCCAACCCGAGAACATGACCGAAACCTCTCGT
CCGACACCGTCCGATGAACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Symbiotic regulator [H]

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MAGLDLVRRVAAHAPGVRLAFRNVPANAAGALLERGEADLLIAADFAVPRATIARPLLRERYVMAQRHGHPRGLAPPDLD
AYCALRHVIVSGDGGGLRGFMDERLHALGRSRVVAVSVQQYHLAPLVLDATDYVCALPERFLLRFADRLDLLPLPIEVDG
FTLSAAWHPRLHADPAHRWLRGALFAAVGARTEDGPDMAPARASSDGARARHAAGRARTTRRPPSRPRHRTTTRTRHERA
RHTRSGAPAPCAAQERRASAVAAPAAVTNTSPASS

Sequences:

>Translated_275_residues
MAGLDLVRRVAAHAPGVRLAFRNVPANAAGALLERGEADLLIAADFAVPRATIARPLLRERYVMAQRHGHPRGLAPPDLD
AYCALRHVIVSGDGGGLRGFMDERLHALGRSRVVAVSVQQYHLAPLVLDATDYVCALPERFLLRFADRLDLLPLPIEVDG
FTLSAAWHPRLHADPAHRWLRGALFAAVGARTEDGPDMAPARASSDGARARHAAGRARTTRRPPSRPRHRTTTRTRHERA
RHTRSGAPAPCAAQERRASAVAAPAAVTNTSPASS
>Mature_274_residues
AGLDLVRRVAAHAPGVRLAFRNVPANAAGALLERGEADLLIAADFAVPRATIARPLLRERYVMAQRHGHPRGLAPPDLDA
YCALRHVIVSGDGGGLRGFMDERLHALGRSRVVAVSVQQYHLAPLVLDATDYVCALPERFLLRFADRLDLLPLPIEVDGF
TLSAAWHPRLHADPAHRWLRGALFAAVGARTEDGPDMAPARASSDGARARHAAGRARTTRRPPSRPRHRTTTRTRHERAR
HTRSGAPAPCAAQERRASAVAAPAAVTNTSPASS

Specific function: Acts in trans to stimulate nod gene expression via nodD3 and exo gene expression via syrA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 29662; Mature: 29531

Theoretical pI: Translated: 11.83; Mature: 11.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLDLVRRVAAHAPGVRLAFRNVPANAAGALLERGEADLLIAADFAVPRATIARPLLRE
CCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
RYVMAQRHGHPRGLAPPDLDAYCALRHVIVSGDGGGLRGFMDERLHALGRSRVVAVSVQQ
HHHHHHHCCCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCEEEEEECH
YHLAPLVLDATDYVCALPERFLLRFADRLDLLPLPIEVDGFTLSAAWHPRLHADPAHRWL
HCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCCCCHHHHHH
RGALFAAVGARTEDGPDMAPARASSDGARARHAAGRARTTRRPPSRPRHRTTTRTRHERA
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHH
RHTRSGAPAPCAAQERRASAVAAPAAVTNTSPASS
HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AGLDLVRRVAAHAPGVRLAFRNVPANAAGALLERGEADLLIAADFAVPRATIARPLLRE
CHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
RYVMAQRHGHPRGLAPPDLDAYCALRHVIVSGDGGGLRGFMDERLHALGRSRVVAVSVQQ
HHHHHHHCCCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCEEEEEECH
YHLAPLVLDATDYVCALPERFLLRFADRLDLLPLPIEVDGFTLSAAWHPRLHADPAHRWL
HCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECCCCCCCCHHHHHH
RGALFAAVGARTEDGPDMAPARASSDGARARHAAGRARTTRRPPSRPRHRTTTRTRHERA
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCHHHCCCCCCCCCCCCCHHHHHHHHH
RHTRSGAPAPCAAQERRASAVAAPAAVTNTSPASS
HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2361944; 1809842; 11481432 [H]