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The map label for this gene is dapF [H]

Identifier: 83719190

GI number: 83719190

Start: 202772

End: 203641

Strand: Reverse

Name: dapF [H]

Synonym: BTH_I0172

Alternate gene names: 83719190

Gene position: 203641-202772 (Counterclockwise)

Preceding gene: 83719911

Following gene: 83719150

Centisome position: 5.35

GC content: 71.15

Gene sequence:

>870_bases
ATGAAACTCTCGTTTACCAAGATGCACGGCGCGGGCAACGACTTCGTCGTGCTCGACGGCTACAGCCGCGCGCTGCCCCC
GCTCACCGACGCGCTGGTGCGCGCGCTCGCCGACCGCCACTTCGGGATCGGCGCCGATCAGTTGCTGCTCGTCGAAAAGC
CGACCGTCGACGGCGCCGACTTCAAGTACCGGATCTTCAACTGCGACGGCGGCGAGGTCGAGCACTGCGGCAACGGCGCG
CGCTGCTTCGTCAAGTTCGTCCGCGACCACGGGCTCACCGACAAGGCGAGCGTGCGCGTCGAAGTGAAGCACGGCGTGAT
CACGCTGACGATGCAGGACAACGGCGAGGTCGTCGTCGACATGGGCGCGCCCGTGTTCGAGCCGGCGCGCGTGCCGTTCG
ACACGAGCGGCCTCGACGGCCGCCGCGAGGGCGCCGACACGCTGTGGCCGCTGCCCGTGAACGGCGCGACGCGCTGGATC
TCGGTCGTGTCGATGGGCAATCCGCACGCGGTGCAGATCGTCGACGACGCCGAGGCGTTCCCGGTGCTCGCCGACGGGCC
GGCGATCGAGCGCGACCCGCGGTTTCCGCAGCGCGTGAACGCGGGCTTCATGCAGATCGTGTCGCGGCACGAGGTGAAGC
TGCGCGTGTACGAGCGCGGCGCGGGCGAGACGCTCGCGTGCGGCACGGGCGCGTGCGCGGCCGTCGCGGCGGGCATCCGG
CGCGGGCAACTCGATTCGCCCGTCACCGTCCACACGCACGGCGGCACGCTGACGATCTCGTGGGACGGCGCGCGCGACGA
ACGCGCGCCGCTCATGATGGCCGGCCCCGCGACGACCGTCTTCGAAGGCGTGATCGACCTGCCCGCCTGA

Upstream 100 bases:

>100_bases
TACTACTGGGTGCACAAGCGCTTCAAGACGCGCCCGCCCGGCGAGCCGAGCTTCTATTGACTCCGCCGCCGCGGCATGCC
CGCGGCATACAATAGCGCCC

Downstream 100 bases:

>100_bases
CCTTTTGCAGCCTGACCTTTCATTTGCCGAAGCCGAACGAAGCGCCATGAACGATCGCGAAGTCGCCGACTACCTGCTCG
CCAACCCCGAATTCTTCGCC

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGA
RCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWI
SVVSMGNPHAVQIVDDAEAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR
RGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA

Sequences:

>Translated_289_residues
MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGA
RCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWI
SVVSMGNPHAVQIVDDAEAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR
RGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA
>Mature_289_residues
MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGA
RCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVDMGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWI
SVVSMGNPHAVQIVDDAEAFPVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR
RGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=285, Percent_Identity=50.1754385964912, Blast_Score=266, Evalue=8e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 30970; Mature: 30970

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD
CCEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD
EEEEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCEEEE
MGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVDDAEAF
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCCC
PVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR
CEEECCCCCCCCCCCHHHHCHHHHHHHHCCCEEEEEEECCCCCEEEECCCHHHHHHHHHH
RGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA
CCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEECCCHHHHHHEECCCC
>Mature Secondary Structure
MKLSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGAD
CCEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
FKYRIFNCDGGEVEHCGNGARCFVKFVRDHGLTDKASVRVEVKHGVITLTMQDNGEVVVD
EEEEEEECCCCCHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEECCEEEEEEECCCCEEEE
MGAPVFEPARVPFDTSGLDGRREGADTLWPLPVNGATRWISVVSMGNPHAVQIVDDAEAF
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCEEEEEEECCCCC
PVLADGPAIERDPRFPQRVNAGFMQIVSRHEVKLRVYERGAGETLACGTGACAAVAAGIR
CEEECCCCCCCCCCCHHHHCHHHHHHHHCCCEEEEEEECCCCCEEEECCCHHHHHHHHHH
RGQLDSPVTVHTHGGTLTISWDGARDERAPLMMAGPATTVFEGVIDLPA
CCCCCCCEEEEECCCEEEEEECCCCCCCCCEEEECCCHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA