Click here to switch to the map view.

The map label for this gene is nahR [H]

Identifier: 83718871

GI number: 83718871

Start: 1597265

End: 1598212

Strand: Reverse

Name: nahR [H]

Synonym: BTH_I1416

Alternate gene names: 83718871

Gene position: 1598212-1597265 (Counterclockwise)

Preceding gene: 83718541

Following gene: 83719521

Centisome position: 41.96

GC content: 70.57

Gene sequence:

>948_bases
ATGCAATCGGATCGAGACCGCGCCGCGTCGCTCGACATCTGGCTCGTGCGCGTGCTGCGCACGCTGCTCGTCGAGCGCAG
CGTGACGCAGGCCGCGCTGCGCCTGAATCAGACGCAGCCCGCGATCAGCGCCGCGCTGCGCAAGCTGCGCGACGCGCTCG
GCGACCCGCTCCTCGTGCGCGGCAAGACGGGCATGGTGCCGACCGAGTATGGCGCGTCGCTTCTCGGCGCGGCCGAGCGC
GCGCTGCGCGACGTCGACTTCGTCGCGACGCCGCACGGCCCGTTCGATCCCGATACCGCGCGCCGCACGTTCCGGATCGC
CGCGCCCGACTACCTGAACGACTTCTTCATGCCGACGCTCGTCGCGCGCTTTCGCGCGGCCGCGCCGCACGCGCGCATCG
AAATCGATTCGCTGAACCCTTCGCTCGATCACGCGGCCGCGCTCGATTCGGGCGCGCTCGATCTCGTGATCGGCAACTGG
CCGAAACCCGATCCGCGCTTCGTGCGCGCCGACCTGTTCTCGGACACGGTCGTCTGCCTGATGCGGCGCGATCATCCGCT
CGCGCGCGCGCCGCTCACGCGCGACGCGTATGCGAACGCCGCGCATCTCGCGCCCGCGCCGTACATCGGCGCGCGGCACA
ACGTGATCGAGCTCGGCCTCGCGCGGGCGGGCATCGCGCGGCGCGTCGTCGCGACGCTGCCGTACTTCGGGCTCGTGCCG
CAGGTGCTGCTTCAATCGGATTTGATCTTCACGACGACGCGCCGCTTCGCGATCCACTACGCGCAACTGCTGCCGCTCGT
CGTCGTCGCGCCGCCCGTGCCGTTTCCGCGCATCCGCTGCTATCAGTTGCGTCACCCGGCGCCCGATCGGCCGACCGACG
TCGATTGGCTGAGCGCACTGATGGCCGATGTGTCGGCCGAACTGACTTTGCGCGGAAAGCGGCGCTGA

Upstream 100 bases:

>100_bases
AGCACGCTGCCGTCCGGGCTCGCATGACGCCGCCCGCCGCGCCGCCGCGCGGGGGCGCAACGCACGGCGCGCGAGCCTGA
CGTTGCCCTCCCCGCTGCAG

Downstream 100 bases:

>100_bases
GAGCCGGCGAACGCGGCGCGCGCGATCGCGCCATGCGACGCGCGACGCCTCGATTCGCCGCGCGCCTGCGCTCACCGCCG
CCGCATCAGCACAACGAAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MQSDRDRAASLDIWLVRVLRTLLVERSVTQAALRLNQTQPAISAALRKLRDALGDPLLVRGKTGMVPTEYGASLLGAAER
ALRDVDFVATPHGPFDPDTARRTFRIAAPDYLNDFFMPTLVARFRAAAPHARIEIDSLNPSLDHAAALDSGALDLVIGNW
PKPDPRFVRADLFSDTVVCLMRRDHPLARAPLTRDAYANAAHLAPAPYIGARHNVIELGLARAGIARRVVATLPYFGLVP
QVLLQSDLIFTTTRRFAIHYAQLLPLVVVAPPVPFPRIRCYQLRHPAPDRPTDVDWLSALMADVSAELTLRGKRR

Sequences:

>Translated_315_residues
MQSDRDRAASLDIWLVRVLRTLLVERSVTQAALRLNQTQPAISAALRKLRDALGDPLLVRGKTGMVPTEYGASLLGAAER
ALRDVDFVATPHGPFDPDTARRTFRIAAPDYLNDFFMPTLVARFRAAAPHARIEIDSLNPSLDHAAALDSGALDLVIGNW
PKPDPRFVRADLFSDTVVCLMRRDHPLARAPLTRDAYANAAHLAPAPYIGARHNVIELGLARAGIARRVVATLPYFGLVP
QVLLQSDLIFTTTRRFAIHYAQLLPLVVVAPPVPFPRIRCYQLRHPAPDRPTDVDWLSALMADVSAELTLRGKRR
>Mature_315_residues
MQSDRDRAASLDIWLVRVLRTLLVERSVTQAALRLNQTQPAISAALRKLRDALGDPLLVRGKTGMVPTEYGASLLGAAER
ALRDVDFVATPHGPFDPDTARRTFRIAAPDYLNDFFMPTLVARFRAAAPHARIEIDSLNPSLDHAAALDSGALDLVIGNW
PKPDPRFVRADLFSDTVVCLMRRDHPLARAPLTRDAYANAAHLAPAPYIGARHNVIELGLARAGIARRVVATLPYFGLVP
QVLLQSDLIFTTTRRFAIHYAQLLPLVVVAPPVPFPRIRCYQLRHPAPDRPTDVDWLSALMADVSAELTLRGKRR

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=300, Percent_Identity=25, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1790147, Length=277, Percent_Identity=28.158844765343, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081766, Length=280, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34829; Mature: 34829

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSDRDRAASLDIWLVRVLRTLLVERSVTQAALRLNQTQPAISAALRKLRDALGDPLLVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEE
GKTGMVPTEYGASLLGAAERALRDVDFVATPHGPFDPDTARRTFRIAAPDYLNDFFMPTL
CCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHCEEEEECCHHHHHHHHHHH
VARFRAAAPHARIEIDSLNPSLDHAAALDSGALDLVIGNWPKPDPRFVRADLFSDTVVCL
HHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHH
MRRDHPLARAPLTRDAYANAAHLAPAPYIGARHNVIELGLARAGIARRVVATLPYFGLVP
HHCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
QVLLQSDLIFTTTRRFAIHYAQLLPLVVVAPPVPFPRIRCYQLRHPAPDRPTDVDWLSAL
HHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
MADVSAELTLRGKRR
HHHHCCEEEECCCCC
>Mature Secondary Structure
MQSDRDRAASLDIWLVRVLRTLLVERSVTQAALRLNQTQPAISAALRKLRDALGDPLLVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEE
GKTGMVPTEYGASLLGAAERALRDVDFVATPHGPFDPDTARRTFRIAAPDYLNDFFMPTL
CCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHCEEEEECCHHHHHHHHHHH
VARFRAAAPHARIEIDSLNPSLDHAAALDSGALDLVIGNWPKPDPRFVRADLFSDTVVCL
HHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHH
MRRDHPLARAPLTRDAYANAAHLAPAPYIGARHNVIELGLARAGIARRVVATLPYFGLVP
HHCCCCCCCCCCCHHHHCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHH
QVLLQSDLIFTTTRRFAIHYAQLLPLVVVAPPVPFPRIRCYQLRHPAPDRPTDVDWLSAL
HHHHHCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
MADVSAELTLRGKRR
HHHHCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]