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The map label for this gene is soxR [H]

Identifier: 83718748

GI number: 83718748

Start: 3557489

End: 3558427

Strand: Reverse

Name: soxR [H]

Synonym: BTH_I3119

Alternate gene names: 83718748

Gene position: 3558427-3557489 (Counterclockwise)

Preceding gene: 83720617

Following gene: 83718704

Centisome position: 93.42

GC content: 71.46

Gene sequence:

>939_bases
TTGAATACGCGTGATCTTCAAGCGTTCGTGGCGGTTGTCGACAGCGGCTCGATGGTGGCCGCCGCGGCCAAGCTCCATCT
GACGCAACCCGGTCTCACGCGGCGCGTGCAAAACCTCGAGACGACGCTTGGCGTGCCGCTCCTCGATCGGCAGAGCAAAC
CGCTCAGGCCGACCGCGGCGGGCCGGGAAGTCTATGCGCTCGCGCGCAACGTGCTGCGCTCGGTCGACGAACTGCTCGCC
GTTGCCTCGCCCGGCAGCGAGCCGGCGGGGGAGCTGCGGATCGGCGTGCCGCCGTTTCTGTCGGAGCTCGCGCTCGAGGG
GCCGATCGACCGGCTGCGCGAAGCGTTTCCGCGCCTCACGCTGCGGATCACGGCCGGCTGGTCGCCGGCGCTGTTGCAAA
ACGTCGAGCGTGCGGCGCTCGACGCCGCGGCGGTGATGATGCCGGCGAGCTTCCCGATGCCGGAAACGCTCGTGTCGACG
CTGCTCGGCGTGCAGCCGACGGTGCTTGTCGCCGCGCGTGACTTCGCGCTGCCGCCGGGACCGTTGCCGCTCGACGCGCT
CGCGCGCTATCCGTGGGTGCTGAGCCAGGACGGCTGCGGAATGCGCTCGGCGCTGAGCCGCGCGTTCAGCGCAGCCGGGT
TGCCGTTCGACGTCGCGGTCGAGGCGTTCGGCTCGGACCTGCAACTGTCGCTCGTCGCGCGCGGCGCGGGGCTCGGCATC
GCGTCGGCGGCCGCGCTCGCGCGCAGCCCGCACCGCGGCGCGCTGCGCATCGTCGAGACGGCGGACGTCGAACCGGGGAT
CAACGTGTGGCTCGTGCACGGCGTGCTGCCGGGCCGGCTGATGCGACCGGTCGAGCTGCTGCGCGAGCGGCTTGTCGCCG
TGCTGGAGGAGGAAAGAAGCGCACGGTTAGGCGGCGAGGCACAAATACCGGCGAATTAG

Upstream 100 bases:

>100_bases
GTTCATCGGAAGGGTCTCGGAAACGAATGAGCCTTCATCGTAGAGACGCGCTTGTTATGCGACAATTGAAATATCTTTAA
TATGATTATGCGAGTTTGTT

Downstream 100 bases:

>100_bases
AACCGGCATTCGAGGGAAAATCCGTATTTTCTCCAAGGAAATGTTGCATTGCGTCAAACAAACCGGTATAGTTCGAACTG
TCTCCTCCATGTCTCCTCTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNTRDLQAFVAVVDSGSMVAAAAKLHLTQPGLTRRVQNLETTLGVPLLDRQSKPLRPTAAGREVYALARNVLRSVDELLA
VASPGSEPAGELRIGVPPFLSELALEGPIDRLREAFPRLTLRITAGWSPALLQNVERAALDAAAVMMPASFPMPETLVST
LLGVQPTVLVAARDFALPPGPLPLDALARYPWVLSQDGCGMRSALSRAFSAAGLPFDVAVEAFGSDLQLSLVARGAGLGI
ASAAALARSPHRGALRIVETADVEPGINVWLVHGVLPGRLMRPVELLRERLVAVLEEERSARLGGEAQIPAN

Sequences:

>Translated_312_residues
MNTRDLQAFVAVVDSGSMVAAAAKLHLTQPGLTRRVQNLETTLGVPLLDRQSKPLRPTAAGREVYALARNVLRSVDELLA
VASPGSEPAGELRIGVPPFLSELALEGPIDRLREAFPRLTLRITAGWSPALLQNVERAALDAAAVMMPASFPMPETLVST
LLGVQPTVLVAARDFALPPGPLPLDALARYPWVLSQDGCGMRSALSRAFSAAGLPFDVAVEAFGSDLQLSLVARGAGLGI
ASAAALARSPHRGALRIVETADVEPGINVWLVHGVLPGRLMRPVELLRERLVAVLEEERSARLGGEAQIPAN
>Mature_312_residues
MNTRDLQAFVAVVDSGSMVAAAAKLHLTQPGLTRRVQNLETTLGVPLLDRQSKPLRPTAAGREVYALARNVLRSVDELLA
VASPGSEPAGELRIGVPPFLSELALEGPIDRLREAFPRLTLRITAGWSPALLQNVERAALDAAAVMMPASFPMPETLVST
LLGVQPTVLVAARDFALPPGPLPLDALARYPWVLSQDGCGMRSALSRAFSAAGLPFDVAVEAFGSDLQLSLVARGAGLGI
ASAAALARSPHRGALRIVETADVEPGINVWLVHGVLPGRLMRPVELLRERLVAVLEEERSARLGGEAQIPAN

Specific function: Transcriptional repressor of soxA gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=250, Percent_Identity=29.2, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1790399, Length=308, Percent_Identity=28.2467532467532, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788297, Length=212, Percent_Identity=30.188679245283, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789506, Length=221, Percent_Identity=25.3393665158371, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788481, Length=242, Percent_Identity=27.2727272727273, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787806, Length=310, Percent_Identity=24.8387096774194, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI145693105, Length=264, Percent_Identity=26.8939393939394, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI157672245, Length=239, Percent_Identity=28.0334728033473, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=276, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789639, Length=194, Percent_Identity=27.319587628866, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789440, Length=196, Percent_Identity=27.0408163265306, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788296, Length=272, Percent_Identity=25.3676470588235, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33017; Mature: 33017

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRDLQAFVAVVDSGSMVAAAAKLHLTQPGLTRRVQNLETTLGVPLLDRQSKPLRPTAA
CCCHHHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GREVYALARNVLRSVDELLAVASPGSEPAGELRIGVPPFLSELALEGPIDRLREAFPRLT
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHCCCHHHHHHHCCCEE
LRITAGWSPALLQNVERAALDAAAVMMPASFPMPETLVSTLLGVQPTVLVAARDFALPPG
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
PLPLDALARYPWVLSQDGCGMRSALSRAFSAAGLPFDVAVEAFGSDLQLSLVARGAGLGI
CCCHHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCH
ASAAALARSPHRGALRIVETADVEPGINVWLVHGVLPGRLMRPVELLRERLVAVLEEERS
HHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ARLGGEAQIPAN
HHCCCCCCCCCC
>Mature Secondary Structure
MNTRDLQAFVAVVDSGSMVAAAAKLHLTQPGLTRRVQNLETTLGVPLLDRQSKPLRPTAA
CCCHHHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GREVYALARNVLRSVDELLAVASPGSEPAGELRIGVPPFLSELALEGPIDRLREAFPRLT
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHCCCHHHHHHHCCCEE
LRITAGWSPALLQNVERAALDAAAVMMPASFPMPETLVSTLLGVQPTVLVAARDFALPPG
EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCC
PLPLDALARYPWVLSQDGCGMRSALSRAFSAAGLPFDVAVEAFGSDLQLSLVARGAGLGI
CCCHHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEEEECCCCCCH
ASAAALARSPHRGALRIVETADVEPGINVWLVHGVLPGRLMRPVELLRERLVAVLEEERS
HHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
ARLGGEAQIPAN
HHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA