| Definition | Burkholderia thailandensis E264 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_007651 |
| Length | 3,809,201 |
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The map label for this gene is ytfR [C]
Identifier: 83718615
GI number: 83718615
Start: 3015547
End: 3016347
Strand: Direct
Name: ytfR [C]
Synonym: BTH_I2646
Alternate gene names: 83718615
Gene position: 3015547-3016347 (Clockwise)
Preceding gene: 83720982
Following gene: 83720109
Centisome position: 79.16
GC content: 65.17
Gene sequence:
>801_bases ATGTCCACGCCAGCATCCAACGATACGATTCTCGCGCTCGAGAACGTCAGCAAGTATTTCGGCAAGGTGATCGCGCTGTC CGGCGTCACGCTGCGCGTCAAGCGCGGCGAGGTGCATTGCCTGCTCGGCGACAACGGCGCCGGCAAGTCCACGCTCATCA AGACGCTCGCGGGCGTGCACCAGCCGTCCGAAGGGCAGTACCTCGTCGACGGCAAGCCGGTGCTGTTCGATTCGCCGAAG GACGCGCTCGACCTCGGCATCGCGACCGTCTATCAGGACCTCGCGCTCGTGCCGCTCCTGTCCGTCGCGCGCAATTTCTT CATGGGCCGCGAGCCGCAGAAAAAGCTGTTCGGCCTCTTCAACGTGATGGACCTCGATTCGAGCGCGCAGATCGCCCGCG CGAAGCTCGCGGAGATGGGCATCAACGTGCGCGACGCGCACCAGCCGATCGGCACGATGTCGGGCGGCGAGCGCCAGTGC CTCGCGATCGCGCGCGCGATCCATTTCGGCGCGCGCGTGCTGATCCTCGACGAGCCGACCGCCGCGCTCGGCGTCAAGCA GAGCTTCAACGTGCTCAAGCTGATCCACACCGCGCGCGCGAAGGGGATCTCGGTGATCTTCATCACGCACAACGTGCACC ACGCGTACCCGATCGGCGATTCGTTCACGCTGCTCAACCGCGGCCGCTCGCTCGGCACGTTCACGAAGGACACGATCAGC AAGAACGAGGTGCTCGACATGATGGCGGGCGGCGCCGAGATGCAGAAGATGATCGCCGAACTCGACGGCGCGACCATTTG A
Upstream 100 bases:
>100_bases GGACTGGTTCCGCGTGTTCCTCGGCGTGATGCTGCTCGTCGCCGTGCTGTTCAACCACTACGTGCGCCGCCGCGTGTCGC AGTCGTAACGGAGTACAAGC
Downstream 100 bases:
>100_bases TCCAGGATTCGCGATGACTTCCCCTACTCTCTCCTTTGCGCAGAACCGCCCGCTCGACGTGATCTGCATCGGCCGCGTCG CCGTCGATCTGTACGCGCAG
Product: sugar ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSTPASNDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHQPSEGQYLVDGKPVLFDSPK DALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSAQIARAKLAEMGINVRDAHQPIGTMSGGERQC LAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHTARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS KNEVLDMMAGGAEMQKMIAELDGATI
Sequences:
>Translated_266_residues MSTPASNDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHQPSEGQYLVDGKPVLFDSPK DALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSAQIARAKLAEMGINVRDAHQPIGTMSGGERQC LAIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHTARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS KNEVLDMMAGGAEMQKMIAELDGATI >Mature_265_residues STPASNDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVHQPSEGQYLVDGKPVLFDSPKD ALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLFNVMDLDSSAQIARAKLAEMGINVRDAHQPIGTMSGGERQCL AIARAIHFGARVLILDEPTAALGVKQSFNVLKLIHTARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTISK NEVLDMMAGGAEMQKMIAELDGATI
Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]
COG id: COG1129
COG function: function code G; ABC-type sugar transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=275, Percent_Identity=27.6363636363636, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI30795238, Length=275, Percent_Identity=27.6363636363636, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=26.2222222222222, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI45446740, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI47078218, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI31657092, Length=215, Percent_Identity=26.5116279069767, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI150417984, Length=209, Percent_Identity=30.1435406698565, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI27477115, Length=253, Percent_Identity=29.2490118577075, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI255708477, Length=243, Percent_Identity=27.5720164609054, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI6005701, Length=247, Percent_Identity=27.9352226720648, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI42741659, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI105990541, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI73747915, Length=166, Percent_Identity=34.9397590361446, Blast_Score=65, Evalue=8e-11, Organism=Homo sapiens, GI73747917, Length=166, Percent_Identity=34.9397590361446, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI48995001, Length=251, Percent_Identity=39.0438247011952, Blast_Score=168, Evalue=4e-43, Organism=Escherichia coli, GI1788472, Length=255, Percent_Identity=33.3333333333333, Blast_Score=160, Evalue=7e-41, Organism=Escherichia coli, GI1788210, Length=234, Percent_Identity=32.9059829059829, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1790525, Length=250, Percent_Identity=32.4, Blast_Score=144, Evalue=5e-36, Organism=Escherichia coli, GI1790190, Length=243, Percent_Identity=31.2757201646091, Blast_Score=143, Evalue=2e-35, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=32.9218106995885, Blast_Score=140, Evalue=9e-35, Organism=Escherichia coli, GI1788897, Length=237, Percent_Identity=32.0675105485232, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1786345, Length=246, Percent_Identity=32.520325203252, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=35, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787792, Length=219, Percent_Identity=32.4200913242009, Blast_Score=108, Evalue=5e-25, Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=29.3333333333333, Blast_Score=107, Evalue=8e-25, Organism=Escherichia coli, GI87082268, Length=245, Percent_Identity=28.9795918367347, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=29.0178571428571, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1790162, Length=226, Percent_Identity=30.9734513274336, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87081791, Length=228, Percent_Identity=31.140350877193, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789672, Length=227, Percent_Identity=27.7533039647577, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787758, Length=226, Percent_Identity=32.3008849557522, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1790467, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787370, Length=237, Percent_Identity=28.6919831223629, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786703, Length=231, Percent_Identity=31.1688311688312, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1789962, Length=228, Percent_Identity=28.9473684210526, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1786398, Length=239, Percent_Identity=28.0334728033473, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786872, Length=232, Percent_Identity=30.1724137931034, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=27.4678111587983, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1789032, Length=240, Percent_Identity=27.0833333333333, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786803, Length=243, Percent_Identity=27.1604938271605, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=28.8888888888889, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=220, Percent_Identity=30.9090909090909, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788165, Length=219, Percent_Identity=30.1369863013699, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=32.3383084577114, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787164, Length=231, Percent_Identity=30.7359307359307, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1790544, Length=234, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=29.0322580645161, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789891, Length=216, Percent_Identity=30.0925925925926, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=25.4980079681275, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081782, Length=247, Percent_Identity=29.9595141700405, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789873, Length=207, Percent_Identity=31.8840579710145, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=27.2321428571429, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787105, Length=217, Percent_Identity=27.6497695852535, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1787500, Length=221, Percent_Identity=28.0542986425339, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790739, Length=231, Percent_Identity=24.6753246753247, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788644, Length=231, Percent_Identity=27.7056277056277, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI48994943, Length=242, Percent_Identity=28.099173553719, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI2367384, Length=186, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790534, Length=216, Percent_Identity=30.5555555555556, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=27.8026905829596, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787759, Length=242, Percent_Identity=29.7520661157025, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788450, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788506, Length=218, Percent_Identity=27.9816513761468, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788540, Length=91, Percent_Identity=40.6593406593407, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI145693107, Length=251, Percent_Identity=27.0916334661355, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786654, Length=237, Percent_Identity=27.8481012658228, Blast_Score=64, Evalue=8e-12, Organism=Escherichia coli, GI1789593, Length=246, Percent_Identity=25.609756097561, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788053, Length=208, Percent_Identity=27.4038461538462, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115534520, Length=239, Percent_Identity=28.8702928870293, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=26.2672811059908, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983516, Length=219, Percent_Identity=26.9406392694064, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=26.2672811059908, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558664, Length=193, Percent_Identity=31.0880829015544, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17565586, Length=219, Percent_Identity=27.8538812785388, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI115533608, Length=204, Percent_Identity=30.3921568627451, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17510237, Length=231, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17543740, Length=202, Percent_Identity=29.2079207920792, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17565938, Length=190, Percent_Identity=32.1052631578947, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71984940, Length=229, Percent_Identity=30.1310043668122, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17541710, Length=194, Percent_Identity=29.8969072164948, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324314, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=2e-14, Organism=Drosophila melanogaster, GI221500365, Length=230, Percent_Identity=30.8695652173913, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI116007184, Length=230, Percent_Identity=30.8695652173913, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI221512771, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24666092, Length=225, Percent_Identity=27.5555555555556, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24643674, Length=205, Percent_Identity=24.8780487804878, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582014, Length=212, Percent_Identity=29.7169811320755, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24582012, Length=212, Percent_Identity=29.7169811320755, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28571209, Length=213, Percent_Identity=26.7605633802817, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI28573573, Length=205, Percent_Identity=26.8292682926829, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI17136662, Length=199, Percent_Identity=26.6331658291457, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015862 - InterPro: IPR015861 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.17 [H]
Molecular weight: Translated: 28569; Mature: 28437
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPASNDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVH CCCCCCCCEEEEHHHHHHHHHHEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHHCC QPSEGQYLVDGKPVLFDSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLF CCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NVMDLDSSAQIARAKLAEMGINVRDAHQPIGTMSGGERQCLAIARAIHFGARVLILDEPT HHCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCC AALGVKQSFNVLKLIHTARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS HHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCHHHHCCCCCCCCHHHHCC KNEVLDMMAGGAEMQKMIAELDGATI HHHHHHHHCCCHHHHHHHHHHCCCCC >Mature Secondary Structure STPASNDTILALENVSKYFGKVIALSGVTLRVKRGEVHCLLGDNGAGKSTLIKTLAGVH CCCCCCCEEEEHHHHHHHHHHEEEECCEEEEEECCEEEEEECCCCCCHHHHHHHHHHCC QPSEGQYLVDGKPVLFDSPKDALDLGIATVYQDLALVPLLSVARNFFMGREPQKKLFGLF CCCCCCEEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH NVMDLDSSAQIARAKLAEMGINVRDAHQPIGTMSGGERQCLAIARAIHFGARVLILDEPT HHCCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCEEEEEECCC AALGVKQSFNVLKLIHTARAKGISVIFITHNVHHAYPIGDSFTLLNRGRSLGTFTKDTIS HHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCEEECCCCCCHHHHCCCCCCCCHHHHCC KNEVLDMMAGGAEMQKMIAELDGATI HHHHHHHHCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]