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The map label for this gene is yphD [H]

Identifier: 83720982

GI number: 83720982

Start: 3014389

End: 3015534

Strand: Direct

Name: yphD [H]

Synonym: BTH_I2645

Alternate gene names: 83720982

Gene position: 3014389-3015534 (Clockwise)

Preceding gene: 83720522

Following gene: 83718615

Centisome position: 79.13

GC content: 67.98

Gene sequence:

>1146_bases
ATGGGTGTAGTCGGCAAGCACATGTCAGCGCACGCACACGAGAAGCCGCAACCGGGCGCGGCGTCCGACGAGCGGCTGCG
CGGCGAAGCGTGGTTCCAGCGCTTTCTCAACCGTCCCGAGTTCGCCGCGATTTCCGGCGCCGTGCTCGTGTTCGCGGTGT
TCGCGTTCGGCGCGGGCGGCTCCGGGATGTTCAACCTCGACGGCATCATGAACTGGTCGCAGGTCGCGGCCTACCTCGGC
ATTCTCGCCGTCGGCGCGTGCCTGCTGATGGTCGCGGGCGAGTTCGACCTGTCGATCGGCTCGATGATCGGCTTCGCCGG
GATGATGGTCGCGATCCCGACCGTCTACTTCCATTGGCCGATCTGGCTCGCGGTGCTGTTCGCGTTCGCGGGCTCGATGG
CGCTCGGCGCGCTCAACGGCTATCTCGTGATGCGCACGAAGCTGCCGTCGTTCATCGTCACGCTCGCGTTCCTGTTCATC
CTGCGGGGCCTGACGCTCGCGCTGTCCATCCTGTTCGCCGACCGCACCATCGTCTCGGGCCTCGGCGACTACGCGCACGC
CGATCCCGTCGTGCACTTCCTGTTCCAGGGCGTCGCGTTCCACGAGCTGTTCCGCTGGCTCGCGCACGCCGGCGTTGGCC
AGTTGCTCGACAACGGCGAGCCGCTCGTGCCGGGCGTGCCGAAGGTGCTGCTGTGGTGGTTCGCCGTCACCGCGATCGGC
GCGTTCGTGCTCGCGAAGACGCGCTACGGCAACTGGATCCTCGCCTCGGGCGGCGACGCGCACGCGGCGAAGAACGTCGG
CGTGCCGGTGCGCCGCGTGAAGATCTCGCTGTTCGTGCTGACCGCGTTCTGCGCGTGCCTGTTCGCCGTGCTGCAGGTGG
CCGACATCGGCTCGGCCGCAGCCGACCGCGGGCTGCAGAAGGAATTCGAGGCGATCATCGCCGCGGTGATCGGCGGCACG
CTGCTCACGGGCGGCTACGGCTCGGTGATCGGCGCCGCGTTCGGCGCGCTGATCTTCGGCGTCGTGCAGATCGGCATCAC
CTACACGAACATCAGCTCGGACTGGTTCCGCGTGTTCCTCGGCGTGATGCTGCTCGTCGCCGTGCTGTTCAACCACTACG
TGCGCCGCCGCGTGTCGCAGTCGTAA

Upstream 100 bases:

>100_bases
CGTTCATCGCATCGATTCGCACGACGCGCGGGCGCTCGTCCGCGCGCTTTACCGGCGCAGCGGAGCGAACGCGCCGCGCG
CCGGGCATCAAGGAGACATC

Downstream 100 bases:

>100_bases
CGGAGTACAAGCATGTCCACGCCAGCATCCAACGATACGATTCTCGCGCTCGAGAACGTCAGCAAGTATTTCGGCAAGGT
GATCGCGCTGTCCGGCGTCA

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLG
ILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFI
LRGLTLALSILFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRWLAHAGVGQLLDNGEPLVPGVPKVLLWWFAVTAIG
AFVLAKTRYGNWILASGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGT
LLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS

Sequences:

>Translated_381_residues
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLG
ILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFI
LRGLTLALSILFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRWLAHAGVGQLLDNGEPLVPGVPKVLLWWFAVTAIG
AFVLAKTRYGNWILASGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGT
LLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS
>Mature_380_residues
GVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGGSGMFNLDGIMNWSQVAAYLGI
LAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWPIWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFIL
RGLTLALSILFADRTIVSGLGDYAHADPVVHFLFQGVAFHELFRWLAHAGVGQLLDNGEPLVPGVPKVLLWWFAVTAIGA
FVLAKTRYGNWILASGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAAADRGLQKEFEAIIAAVIGGTL
LTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFLGVMLLVAVLFNHYVRRRVSQS

Specific function: Probably part of the binding-protein-dependent transport system yphDEF. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=374, Percent_Identity=30.4812834224599, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1789992, Length=375, Percent_Identity=27.2, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI87082395, Length=299, Percent_Identity=32.4414715719064, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=30.9677419354839, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693152, Length=297, Percent_Identity=29.2929292929293, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1790524, Length=359, Percent_Identity=26.4623955431755, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787794, Length=325, Percent_Identity=28.3076923076923, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI145693214, Length=274, Percent_Identity=32.1167883211679, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787793, Length=301, Percent_Identity=26.2458471760797, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 40692; Mature: 40561

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGG
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SGMFNLDGIMNWSQVAAYLGILAVGACLLMVAGEFDLSIGSMIGFAGMMVAIPTVYFHWP
CCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
IWLAVLFAFAGSMALGALNGYLVMRTKLPSFIVTLAFLFILRGLTLALSILFADRTIVSG
HHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGDYAHADPVVHFLFQGVAFHELFRWLAHAGVGQLLDNGEPLVPGVPKVLLWWFAVTAIG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
AFVLAKTRYGNWILASGGDAHAAKNVGVPVRRVKISLFVLTAFCACLFAVLQVADIGSAA
HHHHHHHCCCCEEEECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ADRGLQKEFEAIIAAVIGGTLLTGGYGSVIGAAFGALIFGVVQIGITYTNISSDWFRVFL
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHH
GVMLLVAVLFNHYVRRRVSQS
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GVVGKHMSAHAHEKPQPGAASDERLRGEAWFQRFLNRPEFAAISGAVLVFAVFAFGAGG
CCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC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HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]