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The map label for this gene is nusB [H]

Identifier: 83718415

GI number: 83718415

Start: 1731530

End: 1731967

Strand: Reverse

Name: nusB [H]

Synonym: BTH_I1529

Alternate gene names: 83718415

Gene position: 1731967-1731530 (Counterclockwise)

Preceding gene: 161723127

Following gene: 83719500

Centisome position: 45.47

GC content: 65.3

Gene sequence:

>438_bases
ATGAAGAAGAGCGCCCGCCGACAATCGCGCGAGCTGGCGACGCAGGGCCTGTATCAGTGGCTGCTGTCGAACGCGGCGCC
GGGCGAGATCGACGCGCAATTGCGCGGCGCGCTGGGTTACGACAAGGCCGACAAGACGCTGCTCGACACGATCCTGCATG
GCGTGATCCGCGAGCATGCGACGCTTGCCGAAGCGATCTCGCCGAGCCTTGACCGTCCAATCGATCAGCTCTCGCCCGTC
GAACGGGCAGTGCTGCTGATCGCGACGTACGAGCTCACGCATCAGATCGAAACGCCGTACCGCGTGATCATCAACGAAGC
CGTCGAGCTCGCGAAGACGTTCGGCGGTTCGGACGGCTACAAGTACGTCAACGGCGTGCTCGACAAGCTGGCCGTCAAGC
TGCGCCCGGCCGAGACGCAAGCGCGGCGCGGCGCGTAA

Upstream 100 bases:

>100_bases
TCGCCGTCGAGATGGCGAACCTCACGATGACGCTCGATCAATTGAGCGACGACGAAGAGGACGAGGAAGACGAGGACGAC
GAAGACGAAGAGGAGCGCGC

Downstream 100 bases:

>100_bases
CCTCCGTTCGCGGGCGCGCGGCGCGCGCCCGCTTTTCGCCTTCCCCACCGTTTTGATTCGACGATGAATACCGCTGCCGA
TTCGCTCCTGAGGCTCGCGT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGYDKADKTLLDTILHGVIREHATLAEAISPSLDRPIDQLSPV
ERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGSDGYKYVNGVLDKLAVKLRPAETQARRGA

Sequences:

>Translated_145_residues
MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGYDKADKTLLDTILHGVIREHATLAEAISPSLDRPIDQLSPV
ERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGSDGYKYVNGVLDKLAVKLRPAETQARRGA
>Mature_145_residues
MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGYDKADKTLLDTILHGVIREHATLAEAISPSLDRPIDQLSPV
ERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGSDGYKYVNGVLDKLAVKLRPAETQARRGA

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=136, Percent_Identity=44.1176470588235, Blast_Score=102, Evalue=7e-24,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 15981; Mature: 15981

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGYDKADKTLLDTILHGVIREHA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGSDGY
HHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH
KYVNGVLDKLAVKLRPAETQARRGA
HHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MKKSARRQSRELATQGLYQWLLSNAAPGEIDAQLRGALGYDKADKTLLDTILHGVIREHA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TLAEAISPSLDRPIDQLSPVERAVLLIATYELTHQIETPYRVIINEAVELAKTFGGSDGY
HHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCH
KYVNGVLDKLAVKLRPAETQARRGA
HHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA