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The map label for this gene is yddA [C]

Identifier: 229264287

GI number: 229264287

Start: 3446515

End: 3448281

Strand: Direct

Name: yddA [C]

Synonym: BTH_I3009

Alternate gene names: 229264287

Gene position: 3446515-3448281 (Clockwise)

Preceding gene: 83720352

Following gene: 83720618

Centisome position: 90.48

GC content: 66.5

Gene sequence:

>1767_bases
ATGACTCAATCGACGCAAGCCCTCGCCCCCGTCCCGGACGATCCGACGCAATCCCCGCCCCCGGTATCCACGTGGAGCCT
CATCAAGCCCTATTGGGTTTCCGAGGAGTGGAAGGTCGCATGGGGATTGCTCGTCACGATCGTCGCGATCAACCTTACGC
TCGTGTGGATCAACGTGCGGATCAACTCGTGGAGCGCGTCGTTCTACAACGCGCTCCAATCGAAGGACGTGCGCGACTTT
CCGAGCCTGCTGATCACGTTCGCCGTGCTCGCATTCGCGTTCATCATCCTCGCGGTCTACGGCCTTTATCTGCGGCAGAT
GCTCGGCTTTCGCTGGCGGCAGTGGCTCACGACGCGCTTCCTGAACGAATGGCTCGGCGATCGCAACTTCTACCGGATCG
AGCGCGACCGGCTCGCCGACAACCCCGACCAGCGGATCTCGGACGACTTGCAGTCGCTCGCGTCGACGACGCTGTCGCTG
TCGCTCGACCTGCTGTCGACGGTCGTCACGCTGATCTCGTTCGCGACGATCCTCTGGTCGATCGCCGGCGCGGCGACGAT
CTCGCTCGGCGGCCACGCGATCACGATTCCCGGCTACATGGTGTGGGTCGCGATGGTCTACGCGATCGCGGGCTCGTACG
TGATGCACCGCTTCGGCCATCCGCTCGTGTCGATCAACTACCAGCAGCAGCGCGTCGAGGCGGACTTCCGCTTCAGCCTG
ATCCGCATCCGCGAGAACGCCGAGCAGATCGCGTTCTACAACGGCGAACCCGTCGAGACCGCGCACGAGCAGAACCTGTT
CCAGCGTATCCGCGAAAACTGGTGGCGCGTGATGCGCTACACGAAGCGGCTCACGTTCGTGCTGAACTTCTACGCGCAAC
TCGCGAGCCTCTTTCCGATCGCGGTCGCCGCGCCGCGCTACTTCGCGGGCGCGTTCACGTTCGGCGTGCTGATGCAGATC
AGCCGCGCGTTCGGCACCGTCAGCGATTCGTTTTCATGGTTCATCAACAGTTACGGCACGCTCGCCGAGTGGCGCGCGAC
CGTCAACCGTCTGCGCGAATTCAAGCGCGTGATGGGCGCGTCGCATCTGAAGGAAGCGATGTCGCCCGCGACCGAGCACG
GCGGCATCAACCTGCACTACGTCGATGCGCAGCAGATCACGACATCGGGCCTGAAGCTCGCGCTGCCGAACGGCGCGGCG
CTCGCGTCGATCGGCGACGTCGCGATCGAGCCCGGCTCGCGCTGGCTCGTGCGCGGGCCGTCCGGCTCCGGCAAGAGCAC
GCTGATGCGCGCGCTCGCGGGCCTCTGGCCGTTCGGCGACGGCGCGATCGACGCGCCCGTCGCCGCGCGAATGATGTTCG
TCCCGCAGCAGAGCTATTTGCCGATCGGCACGCTGAAGGCGGCGCTCGCGTACCCGTCGGCCGTCGACGCGTTCAGCGAC
GACGCATGCCGCGACGCGTTGCGCGCGTGCGGTCTCGCCGACTATGTCGAGCGGCTCGGCGAGACGGGCCACTGGACGCG
CATCCTGTCGCCCGGCGAGCAGCAGCGCCTCGCGGGCGCGCGCGTGCTGCTGCACAAGCCCGACTATCTGTTCCTCGACG
AGGCGACGAGCGCGCTCGACGCGGACAACGAGGCGCGCCTCTACCGGCTCTTCGACGAACGGCTGCCGAAGGCGGCGATC
GTCAGCATCGCGCATCGCGAATCGGTCGCGTCGTTTCATCAGCAGACGCTCGACGTGCGCCGCGACGAAGCGCGCGTGGC
CGCGTGA

Upstream 100 bases:

>100_bases
CCAGAATCCGCGGCACGCGTGCCGCGTGCGGCGCCGAACGGACGCGCCGGGCGCGGCGTGCACGTTGGCTCGGCGTCGCC
GGCCTCACATCAGGAAGCTC

Downstream 100 bases:

>100_bases
GCGCCGCGCGCGAGCGCGTCGTGCTGATCGCGGGCGCGGGGATCGGCGCGACGCTCGCCGCGCGGCTCGCCACGCTCGAC
ATCGCGCCGATGCCGCAAGC

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 588; Mature: 587

Protein sequence:

>588_residues
MTQSTQALAPVPDDPTQSPPPVSTWSLIKPYWVSEEWKVAWGLLVTIVAINLTLVWINVRINSWSASFYNALQSKDVRDF
PSLLITFAVLAFAFIILAVYGLYLRQMLGFRWRQWLTTRFLNEWLGDRNFYRIERDRLADNPDQRISDDLQSLASTTLSL
SLDLLSTVVTLISFATILWSIAGAATISLGGHAITIPGYMVWVAMVYAIAGSYVMHRFGHPLVSINYQQQRVEADFRFSL
IRIRENAEQIAFYNGEPVETAHEQNLFQRIRENWWRVMRYTKRLTFVLNFYAQLASLFPIAVAAPRYFAGAFTFGVLMQI
SRAFGTVSDSFSWFINSYGTLAEWRATVNRLREFKRVMGASHLKEAMSPATEHGGINLHYVDAQQITTSGLKLALPNGAA
LASIGDVAIEPGSRWLVRGPSGSGKSTLMRALAGLWPFGDGAIDAPVAARMMFVPQQSYLPIGTLKAALAYPSAVDAFSD
DACRDALRACGLADYVERLGETGHWTRILSPGEQQRLAGARVLLHKPDYLFLDEATSALDADNEARLYRLFDERLPKAAI
VSIAHRESVASFHQQTLDVRRDEARVAA

Sequences:

>Translated_588_residues
MTQSTQALAPVPDDPTQSPPPVSTWSLIKPYWVSEEWKVAWGLLVTIVAINLTLVWINVRINSWSASFYNALQSKDVRDF
PSLLITFAVLAFAFIILAVYGLYLRQMLGFRWRQWLTTRFLNEWLGDRNFYRIERDRLADNPDQRISDDLQSLASTTLSL
SLDLLSTVVTLISFATILWSIAGAATISLGGHAITIPGYMVWVAMVYAIAGSYVMHRFGHPLVSINYQQQRVEADFRFSL
IRIRENAEQIAFYNGEPVETAHEQNLFQRIRENWWRVMRYTKRLTFVLNFYAQLASLFPIAVAAPRYFAGAFTFGVLMQI
SRAFGTVSDSFSWFINSYGTLAEWRATVNRLREFKRVMGASHLKEAMSPATEHGGINLHYVDAQQITTSGLKLALPNGAA
LASIGDVAIEPGSRWLVRGPSGSGKSTLMRALAGLWPFGDGAIDAPVAARMMFVPQQSYLPIGTLKAALAYPSAVDAFSD
DACRDALRACGLADYVERLGETGHWTRILSPGEQQRLAGARVLLHKPDYLFLDEATSALDADNEARLYRLFDERLPKAAI
VSIAHRESVASFHQQTLDVRRDEARVAA
>Mature_587_residues
TQSTQALAPVPDDPTQSPPPVSTWSLIKPYWVSEEWKVAWGLLVTIVAINLTLVWINVRINSWSASFYNALQSKDVRDFP
SLLITFAVLAFAFIILAVYGLYLRQMLGFRWRQWLTTRFLNEWLGDRNFYRIERDRLADNPDQRISDDLQSLASTTLSLS
LDLLSTVVTLISFATILWSIAGAATISLGGHAITIPGYMVWVAMVYAIAGSYVMHRFGHPLVSINYQQQRVEADFRFSLI
RIRENAEQIAFYNGEPVETAHEQNLFQRIRENWWRVMRYTKRLTFVLNFYAQLASLFPIAVAAPRYFAGAFTFGVLMQIS
RAFGTVSDSFSWFINSYGTLAEWRATVNRLREFKRVMGASHLKEAMSPATEHGGINLHYVDAQQITTSGLKLALPNGAAL
ASIGDVAIEPGSRWLVRGPSGSGKSTLMRALAGLWPFGDGAIDAPVAARMMFVPQQSYLPIGTLKAALAYPSAVDAFSDD
ACRDALRACGLADYVERLGETGHWTRILSPGEQQRLAGARVLLHKPDYLFLDEATSALDADNEARLYRLFDERLPKAAIV
SIAHRESVASFHQQTLDVRRDEARVAA

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4506341, Length=580, Percent_Identity=24.4827586206897, Blast_Score=162, Evalue=1e-39,
Organism=Homo sapiens, GI4826958, Length=555, Percent_Identity=25.7657657657658, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI9945308, Length=604, Percent_Identity=26.8211920529801, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI7262393, Length=593, Percent_Identity=24.7892074198988, Blast_Score=157, Evalue=3e-38,
Organism=Homo sapiens, GI9955963, Length=189, Percent_Identity=30.1587301587302, Blast_Score=75, Evalue=3e-13,
Organism=Homo sapiens, GI255708477, Length=178, Percent_Identity=32.0224719101124, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI148612844, Length=178, Percent_Identity=32.0224719101124, Blast_Score=73, Evalue=8e-13,
Organism=Homo sapiens, GI9955966, Length=195, Percent_Identity=29.7435897435897, Blast_Score=73, Evalue=9e-13,
Organism=Homo sapiens, GI45243524, Length=195, Percent_Identity=29.7435897435897, Blast_Score=73, Evalue=9e-13,
Organism=Homo sapiens, GI9955968, Length=195, Percent_Identity=29.7435897435897, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4505771, Length=233, Percent_Identity=28.3261802575107, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI9961250, Length=240, Percent_Identity=27.5, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI171184400, Length=185, Percent_Identity=34.5945945945946, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI1787772, Length=559, Percent_Identity=33.0948121645796, Blast_Score=321, Evalue=6e-89,
Organism=Escherichia coli, GI1786575, Length=336, Percent_Identity=25.8928571428571, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787112, Length=183, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787143, Length=398, Percent_Identity=22.8643216080402, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17542146, Length=577, Percent_Identity=24.0901213171577, Blast_Score=168, Evalue=7e-42,
Organism=Caenorhabditis elegans, GI17532411, Length=537, Percent_Identity=25.1396648044693, Blast_Score=164, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17532409, Length=503, Percent_Identity=25.2485089463221, Blast_Score=160, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17558960, Length=646, Percent_Identity=24.1486068111455, Blast_Score=141, Evalue=8e-34,
Organism=Caenorhabditis elegans, GI17564250, Length=576, Percent_Identity=24.8263888888889, Blast_Score=122, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI72000518, Length=599, Percent_Identity=24.5409015025042, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI72000520, Length=553, Percent_Identity=24.5931283905967, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71992285, Length=349, Percent_Identity=26.647564469914, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI25146765, Length=259, Percent_Identity=26.6409266409266, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71992070, Length=259, Percent_Identity=26.6409266409266, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI86564969, Length=259, Percent_Identity=26.6409266409266, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992066, Length=259, Percent_Identity=26.6409266409266, Blast_Score=78, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71992080, Length=259, Percent_Identity=26.6409266409266, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=272, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=192, Percent_Identity=29.6875, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=187, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17533971, Length=190, Percent_Identity=27.8947368421053, Blast_Score=73, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17511077, Length=177, Percent_Identity=29.3785310734463, Blast_Score=73, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=184, Percent_Identity=30.9782608695652, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=179, Percent_Identity=34.6368715083799, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71996550, Length=347, Percent_Identity=25.9365994236311, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17556528, Length=177, Percent_Identity=29.9435028248588, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6325110, Length=182, Percent_Identity=33.5164835164835, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6324985, Length=181, Percent_Identity=30.939226519337, Blast_Score=75, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6323217, Length=185, Percent_Identity=35.1351351351351, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24643394, Length=507, Percent_Identity=24.0631163708087, Blast_Score=154, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24638550, Length=589, Percent_Identity=22.4108658743633, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24638552, Length=589, Percent_Identity=22.4108658743633, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24638554, Length=589, Percent_Identity=22.4108658743633, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24638546, Length=589, Percent_Identity=22.4108658743633, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24638556, Length=589, Percent_Identity=22.4108658743633, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24638548, Length=589, Percent_Identity=22.4108658743633, Blast_Score=139, Evalue=5e-33,
Organism=Drosophila melanogaster, GI24638558, Length=528, Percent_Identity=23.4848484848485, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI85726357, Length=182, Percent_Identity=29.1208791208791, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357907, Length=221, Percent_Identity=29.8642533936652, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 65833; Mature: 65702

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSTQALAPVPDDPTQSPPPVSTWSLIKPYWVSEEWKVAWGLLVTIVAINLTLVWINVR
CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEE
INSWSASFYNALQSKDVRDFPSLLITFAVLAFAFIILAVYGLYLRQMLGFRWRQWLTTRF
EECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEWLGDRNFYRIERDRLADNPDQRISDDLQSLASTTLSLSLDLLSTVVTLISFATILWS
HHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGAATISLGGHAITIPGYMVWVAMVYAIAGSYVMHRFGHPLVSINYQQQRVEADFRFSL
HHHHHEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCHHHHHHH
IRIRENAEQIAFYNGEPVETAHEQNLFQRIRENWWRVMRYTKRLTFVLNFYAQLASLFPI
HEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAAPRYFAGAFTFGVLMQISRAFGTVSDSFSWFINSYGTLAEWRATVNRLREFKRVMGA
HHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCH
SHLKEAMSPATEHGGINLHYVDAQQITTSGLKLALPNGAALASIGDVAIEPGSRWLVRGP
HHHHHHHCCCHHCCCCEEEEECHHHHHHCCCEEECCCCCHHHHCCCEEECCCCEEEEECC
SGSGKSTLMRALAGLWPFGDGAIDAPVAARMMFVPQQSYLPIGTLKAALAYPSAVDAFSD
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHCCC
DACRDALRACGLADYVERLGETGHWTRILSPGEQQRLAGARVLLHKPDYLFLDEATSALD
HHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCEEEEECCCEEEEECHHHHHC
ADNEARLYRLFDERLPKAAIVSIAHRESVASFHQQTLDVRRDEARVAA
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TQSTQALAPVPDDPTQSPPPVSTWSLIKPYWVSEEWKVAWGLLVTIVAINLTLVWINVR
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEE
INSWSASFYNALQSKDVRDFPSLLITFAVLAFAFIILAVYGLYLRQMLGFRWRQWLTTRF
EECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEWLGDRNFYRIERDRLADNPDQRISDDLQSLASTTLSLSLDLLSTVVTLISFATILWS
HHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGAATISLGGHAITIPGYMVWVAMVYAIAGSYVMHRFGHPLVSINYQQQRVEADFRFSL
HHHHHEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCHHHHHHH
IRIRENAEQIAFYNGEPVETAHEQNLFQRIRENWWRVMRYTKRLTFVLNFYAQLASLFPI
HEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVAAPRYFAGAFTFGVLMQISRAFGTVSDSFSWFINSYGTLAEWRATVNRLREFKRVMGA
HHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCH
SHLKEAMSPATEHGGINLHYVDAQQITTSGLKLALPNGAALASIGDVAIEPGSRWLVRGP
HHHHHHHCCCHHCCCCEEEEECHHHHHHCCCEEECCCCCHHHHCCCEEECCCCEEEEECC
SGSGKSTLMRALAGLWPFGDGAIDAPVAARMMFVPQQSYLPIGTLKAALAYPSAVDAFSD
CCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHCCC
DACRDALRACGLADYVERLGETGHWTRILSPGEQQRLAGARVLLHKPDYLFLDEATSALD
HHHHHHHHHCCHHHHHHHHCCCCCEEEECCCCHHHHHHHCEEEEECCCEEEEECHHHHHC
ADNEARLYRLFDERLPKAAIVSIAHRESVASFHQQTLDVRRDEARVAA
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]