Click here to switch to the map view.

The map label for this gene is degP [H]

Identifier: 83720352

GI number: 83720352

Start: 3422762

End: 3423925

Strand: Direct

Name: degP [H]

Synonym: BTH_I2979

Alternate gene names: 83720352

Gene position: 3422762-3423925 (Clockwise)

Preceding gene: 83719226

Following gene: 229264287

Centisome position: 89.86

GC content: 66.58

Gene sequence:

>1164_bases
GTGCTGCTCGCACTGATGTTCATCGTGGCGACGCTCAAGCCGCAGTGGCTCCAACGGCAGGGCCAGCTCGGCAAACAGCT
CGCTGCGCCGATCGTCGCGCTGCGGGAAGTCGCGCCCGGCGTCGGCGGCGCGCCCGCTCAATCCTCGTACGCGGATGCCG
CGCAAAAGGCAATGCCCGCGGTCGTCAACGTATTCTCCAGCAAGGACGGCTCGCTGCCGCCCGATCCGCGCGCGAAGGAC
CCGCTCTTTCGCTATTTCTTCGGCGACCGCAACGCGCGCCGGCAGCAGGAGGAGCCCGCGGCCAATCTGGGGTCGGGCGT
CATCGTAAGCTCGGAGGGTTACATTCTAACGAACCAGCACGTCGTCGACGGCGCGGACCAGATCGAAGTCGCGCTCGCCG
ACGGCCGCACGGCCACCGCGAAGGTGATCGGCAGCGATCCGGAAACCGACCTCGCGGTGCTCAAGATCAACATGACGAAT
CTGCCGACGATCACGCTCGGCCGCTCGGACCAGGCGCGGGTCGGCGACGTCGTGCTCGCGATCGGCAACCCGTTCGGCGT
CGGCCAGACGGTCACGATGGGGATCATCAGCGCGCTCGGGCGCAACCACCTCGGCATCAACACGTTCGAGAACTTCATCC
AGACCGACGCGCCGATCAATCCGGGCAACTCGGGCGGCGCGCTCGTCGACGTGAACGGCAACCTGCTCGGCATCAACACG
GCGATCTACTCGCGCTCGGGCGGCTCGCTCGGCATCGGCTTCGCGATCCCCGTATCGACCGCGCGCAACGTGCTCGAAAG
CATCATCACGACGGGCGCCGTCACGCGCGGATGGATCGGCGTCGAGCCGCAGGACGTGACGCCGGAAATCGCCGAGTCGT
TCAGCCTCGCGCAAAAATCGGGCGCGATCGTCGCGGGCGTGTTGCAGGGCGGCCCGGCCGACAAGGCGGGAATCAAGCCG
GGCGACATTCTCGTGTCGATCGACGACGAGGAAATCACCGATACGACGAAGCTGCTGAACGTCGTCGCGCAGATCAAGCC
CGGCACGCCGGCGAAGGTTCATGTCGTGCGCAAGGGCAAGGAGTTCGATGTGACGGTCGTGATCGGCAAGCGGCCGCCGC
CACCGAAACAGGCGCTCGACGATCAGAACAGCGACGAGGAGTAA

Upstream 100 bases:

>100_bases
TATTGTTCAAGTACAATTCAAGTTCGATCCGATCCATATAAACCTCTAGTATCTTCAAATGCTTAGACGCTTCTGGCTGT
TCTTCGCCCAAGCGGTGACG

Downstream 100 bases:

>100_bases
GCGCGGCGGCGGGCTCCGCAGGGGCGGCCGCGCGGAGCCCGCGCTGTGCGCACCGCCCCGGCGCGGCCGCATGGTTATTC
CGGCTGGGCCGCGCAGCGTT

Product: serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MLLALMFIVATLKPQWLQRQGQLGKQLAAPIVALREVAPGVGGAPAQSSYADAAQKAMPAVVNVFSSKDGSLPPDPRAKD
PLFRYFFGDRNARRQQEEPAANLGSGVIVSSEGYILTNQHVVDGADQIEVALADGRTATAKVIGSDPETDLAVLKINMTN
LPTITLGRSDQARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLGINTFENFIQTDAPINPGNSGGALVDVNGNLLGINT
AIYSRSGGSLGIGFAIPVSTARNVLESIITTGAVTRGWIGVEPQDVTPEIAESFSLAQKSGAIVAGVLQGGPADKAGIKP
GDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGKEFDVTVVIGKRPPPPKQALDDQNSDEE

Sequences:

>Translated_387_residues
MLLALMFIVATLKPQWLQRQGQLGKQLAAPIVALREVAPGVGGAPAQSSYADAAQKAMPAVVNVFSSKDGSLPPDPRAKD
PLFRYFFGDRNARRQQEEPAANLGSGVIVSSEGYILTNQHVVDGADQIEVALADGRTATAKVIGSDPETDLAVLKINMTN
LPTITLGRSDQARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLGINTFENFIQTDAPINPGNSGGALVDVNGNLLGINT
AIYSRSGGSLGIGFAIPVSTARNVLESIITTGAVTRGWIGVEPQDVTPEIAESFSLAQKSGAIVAGVLQGGPADKAGIKP
GDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGKEFDVTVVIGKRPPPPKQALDDQNSDEE
>Mature_387_residues
MLLALMFIVATLKPQWLQRQGQLGKQLAAPIVALREVAPGVGGAPAQSSYADAAQKAMPAVVNVFSSKDGSLPPDPRAKD
PLFRYFFGDRNARRQQEEPAANLGSGVIVSSEGYILTNQHVVDGADQIEVALADGRTATAKVIGSDPETDLAVLKINMTN
LPTITLGRSDQARVGDVVLAIGNPFGVGQTVTMGIISALGRNHLGINTFENFIQTDAPINPGNSGGALVDVNGNLLGINT
AIYSRSGGSLGIGFAIPVSTARNVLESIITTGAVTRGWIGVEPQDVTPEIAESFSLAQKSGAIVAGVLQGGPADKAGIKP
GDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGKEFDVTVVIGKRPPPPKQALDDQNSDEE

Specific function: Protease With A Shared Specificity With Degp. [C]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PDZ (DHR) domains [H]

Homologues:

Organism=Homo sapiens, GI4506141, Length=361, Percent_Identity=32.9639889196676, Blast_Score=146, Evalue=4e-35,
Organism=Homo sapiens, GI7019477, Length=290, Percent_Identity=35.1724137931034, Blast_Score=138, Evalue=1e-32,
Organism=Homo sapiens, GI24308541, Length=254, Percent_Identity=35.4330708661417, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI22129776, Length=317, Percent_Identity=32.807570977918, Blast_Score=129, Evalue=5e-30,
Organism=Escherichia coli, GI1789629, Length=326, Percent_Identity=44.7852760736196, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1786356, Length=343, Percent_Identity=41.9825072886297, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1789630, Length=329, Percent_Identity=42.8571428571429, Blast_Score=227, Evalue=8e-61,
Organism=Drosophila melanogaster, GI24646839, Length=307, Percent_Identity=34.2019543973941, Blast_Score=146, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011782
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 40386; Mature: 40386

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLALMFIVATLKPQWLQRQGQLGKQLAAPIVALREVAPGVGGAPAQSSYADAAQKAMPA
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
VVNVFSSKDGSLPPDPRAKDPLFRYFFGDRNARRQQEEPAANLGSGVIVSSEGYILTNQH
HHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCHHHCCCCEEEECCCEEEECCE
VVDGADQIEVALADGRTATAKVIGSDPETDLAVLKINMTNLPTITLGRSDQARVGDVVLA
EECCCCEEEEEEECCCEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEE
IGNPFGVGQTVTMGIISALGRNHLGINTFENFIQTDAPINPGNSGGALVDVNGNLLGINT
ECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEE
AIYSRSGGSLGIGFAIPVSTARNVLESIITTGAVTRGWIGVEPQDVTPEIAESFSLAQKS
EEEECCCCCEEEEEEECHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHC
GAIVAGVLQGGPADKAGIKPGDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGK
CCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
EFDVTVVIGKRPPPPKQALDDQNSDEE
CEEEEEEECCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MLLALMFIVATLKPQWLQRQGQLGKQLAAPIVALREVAPGVGGAPAQSSYADAAQKAMPA
CHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
VVNVFSSKDGSLPPDPRAKDPLFRYFFGDRNARRQQEEPAANLGSGVIVSSEGYILTNQH
HHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCCHHHCCCCEEEECCCEEEECCE
VVDGADQIEVALADGRTATAKVIGSDPETDLAVLKINMTNLPTITLGRSDQARVGDVVLA
EECCCCEEEEEEECCCEEEEEEECCCCCCCEEEEEEECCCCCEEEECCCCCCCCCEEEEE
IGNPFGVGQTVTMGIISALGRNHLGINTFENFIQTDAPINPGNSGGALVDVNGNLLGINT
ECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEE
AIYSRSGGSLGIGFAIPVSTARNVLESIITTGAVTRGWIGVEPQDVTPEIAESFSLAQKS
EEEECCCCCEEEEEEECHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHHHHHHHHC
GAIVAGVLQGGPADKAGIKPGDILVSIDDEEITDTTKLLNVVAQIKPGTPAKVHVVRKGK
CCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
EFDVTVVIGKRPPPPKQALDDQNSDEE
CEEEEEEECCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10684935 [H]