Click here to switch to the map view.

The map label for this gene is xylA [H]

Identifier: 161723139

GI number: 161723139

Start: 2632885

End: 2634207

Strand: Direct

Name: xylA [H]

Synonym: BTH_I2338

Alternate gene names: 161723139

Gene position: 2632885-2634207 (Clockwise)

Preceding gene: 83720772

Following gene: 83720424

Centisome position: 69.12

GC content: 67.57

Gene sequence:

>1323_bases
ATGTCGTATTTCGAACACATTCCCGCGATTCGCTACGAAGGCCCGCAATCGGACAATCCGCTCGCGTACCGGCATTACGA
CCGCACGAAGCGGGTGCTCGGCAAGACGCTCGAGGAGCACCTGCGGATCGCCGTCTGCTATTGGCACACGTTCGTGTGGC
CGGGGCAAGACGTGTTCGGCCAGGGCGCGTTGCGGCGGCCGTGGCAGCAGCCGGGCGAGCCGCTCGAGCGCGCGCGGCAG
AAGGCCGATGCGGCGTTCGCGTTCTTCACGAAGCTCGGCACGCCGTTCTATACGTTTCACGACACCGACGTCGCGCCGGA
AGGGGCGAACCTGCACGAGTACGTCGAGAACTTCGCGCGGATGGTCGACTACCTCGGCGAGCACCAGCAGGCGAGCGGCG
TGCGGCTGCTGTGGGGCACCGCGAACCTGTTCTCGCATCCGCGCTTCGCGGCCGGCGCGGCGACGAGCCCGAATCCCGAT
GCGTTCGCGTGGGCGGCGACCCAGGTGTGCCACGCGCTCGACGCGACGCACCGGCTCGGCGGCGAGAACTACGTGCTGTG
GGGCGGCCGGGAAGGGTACGAGACGCTGCTCAACACGGATCTCGCGCGCGAGCGCGAGCAATTGGCCAGGTTTCTGGCGA
TGGTCGTCGAGCACAAGCACCGGATCGGCTTCACCGGCGCGCTGCTGATCGAGCCGAAACCGCAGGAGCCGACGAAGCAC
CAGTACGACTACGACGTCGCGACCGTGCACGGCTTGCTCACGCAATACGGATTGCAGAACGAGATCCGCGTGAACATCGA
GGCGAACCACGCGACGCTCGCCGGCCATTCGTTCCATCACGAGATCGCGAACGCGTTCGCGCTCGGCGTGTTCGGCAGCG
TCGACGCGAACCGCGGCGATCCGCAGAACGGCTGGGACACCGACCAGTTCCCGAACAGCGTCGAGGAGCTGACGCTCGCG
TTCTACGAGATCCTGCGCCACGGCGGTTTCACGACGGGCGGCATGAACTTCGACGCGAAGGTACGGCGCCAGAGCGTCGA
TCCGGAGGACCTGTTTCACGGCCATATCGGCGCGATCGACGTGCTCGCGCTCGCGCTCGAGCGCGCGGCCGTGCTGGTGG
AGAACGACCGGCTCGACGCGCTGCGCCGGCGCCGCTACGCGCAATGGGATTCGGAGTTCGGCCGCAAGATACTCGCGGGC
GGTTATTCGCTGCAGTCGCTCGCGGCCGACGCGCTCGCGCGCGGCGTGAACCCGCAGCACGCAAGCGGCGCGCAGGAGCG
GCTCGAGAACATCGTGAACCAGGCGATCTACGCGTTGCGCTGA

Upstream 100 bases:

>100_bases
CGAGGGCGCGCGAGCACGATCCAGCCAGACCGAATTCGGCCCCGCACGTCACGGCGACGCGCGTTGCGCCGCAACAAGAC
CGGTCCTGAATGGAGACGCC

Downstream 100 bases:

>100_bases
TTCGAGGTTCGCCGGGCTCGCCCCGGCCGCCGGCGTTCCGCGGGCTCGAACCCGCAGGCGCAGCCCGCGCCGCACCGGCC
GGCCGCCGCAGGATTCGCCT

Product: xylose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MSYFEHIPAIRYEGPQSDNPLAYRHYDRTKRVLGKTLEEHLRIAVCYWHTFVWPGQDVFGQGALRRPWQQPGEPLERARQ
KADAAFAFFTKLGTPFYTFHDTDVAPEGANLHEYVENFARMVDYLGEHQQASGVRLLWGTANLFSHPRFAAGAATSPNPD
AFAWAATQVCHALDATHRLGGENYVLWGGREGYETLLNTDLAREREQLARFLAMVVEHKHRIGFTGALLIEPKPQEPTKH
QYDYDVATVHGLLTQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGDPQNGWDTDQFPNSVEELTLA
FYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFHGHIGAIDVLALALERAAVLVENDRLDALRRRRYAQWDSEFGRKILAG
GYSLQSLAADALARGVNPQHASGAQERLENIVNQAIYALR

Sequences:

>Translated_440_residues
MSYFEHIPAIRYEGPQSDNPLAYRHYDRTKRVLGKTLEEHLRIAVCYWHTFVWPGQDVFGQGALRRPWQQPGEPLERARQ
KADAAFAFFTKLGTPFYTFHDTDVAPEGANLHEYVENFARMVDYLGEHQQASGVRLLWGTANLFSHPRFAAGAATSPNPD
AFAWAATQVCHALDATHRLGGENYVLWGGREGYETLLNTDLAREREQLARFLAMVVEHKHRIGFTGALLIEPKPQEPTKH
QYDYDVATVHGLLTQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGDPQNGWDTDQFPNSVEELTLA
FYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFHGHIGAIDVLALALERAAVLVENDRLDALRRRRYAQWDSEFGRKILAG
GYSLQSLAADALARGVNPQHASGAQERLENIVNQAIYALR
>Mature_439_residues
SYFEHIPAIRYEGPQSDNPLAYRHYDRTKRVLGKTLEEHLRIAVCYWHTFVWPGQDVFGQGALRRPWQQPGEPLERARQK
ADAAFAFFTKLGTPFYTFHDTDVAPEGANLHEYVENFARMVDYLGEHQQASGVRLLWGTANLFSHPRFAAGAATSPNPDA
FAWAATQVCHALDATHRLGGENYVLWGGREGYETLLNTDLAREREQLARFLAMVVEHKHRIGFTGALLIEPKPQEPTKHQ
YDYDVATVHGLLTQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGDPQNGWDTDQFPNSVEELTLAF
YEILRHGGFTTGGMNFDAKVRRQSVDPEDLFHGHIGAIDVLALALERAAVLVENDRLDALRRRRYAQWDSEFGRKILAGG
YSLQSLAADALARGVNPQHASGAQERLENIVNQAIYALR

Specific function: Unknown

COG id: COG2115

COG function: function code G; Xylose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xylose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI1789988, Length=436, Percent_Identity=66.9724770642202, Blast_Score=624, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307
- InterPro:   IPR013452
- InterPro:   IPR001998 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.3.1.5 [H]

Molecular weight: Translated: 49425; Mature: 49294

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS00172 XYLOSE_ISOMERASE_1 ; PS00173 XYLOSE_ISOMERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYFEHIPAIRYEGPQSDNPLAYRHYDRTKRVLGKTLEEHLRIAVCYWHTFVWPGQDVFG
CCHHHHCCCEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHEEHEEEEHHCCCCHHHHC
QGALRRPWQQPGEPLERARQKADAAFAFFTKLGTPFYTFHDTDVAPEGANLHEYVENFAR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH
MVDYLGEHQQASGVRLLWGTANLFSHPRFAAGAATSPNPDAFAWAATQVCHALDATHRLG
HHHHHCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GENYVLWGGREGYETLLNTDLAREREQLARFLAMVVEHKHRIGFTGALLIEPKPQEPTKH
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
QYDYDVATVHGLLTQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGD
CCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
PQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFHGHIGAID
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHCCCCHHHH
VLALALERAAVLVENDRLDALRRRRYAQWDSEFGRKILAGGYSLQSLAADALARGVNPQH
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCCCC
ASGAQERLENIVNQAIYALR
CCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SYFEHIPAIRYEGPQSDNPLAYRHYDRTKRVLGKTLEEHLRIAVCYWHTFVWPGQDVFG
CHHHHCCCEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHHHEEHEEEEHHCCCCHHHHC
QGALRRPWQQPGEPLERARQKADAAFAFFTKLGTPFYTFHDTDVAPEGANLHEYVENFAR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH
MVDYLGEHQQASGVRLLWGTANLFSHPRFAAGAATSPNPDAFAWAATQVCHALDATHRLG
HHHHHCCCCCCCCCEEEEECHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GENYVLWGGREGYETLLNTDLAREREQLARFLAMVVEHKHRIGFTGALLIEPKPQEPTKH
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
QYDYDVATVHGLLTQYGLQNEIRVNIEANHATLAGHSFHHEIANAFALGVFGSVDANRGD
CCCCHHHHHHHHHHHHCCCCEEEEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCCCC
PQNGWDTDQFPNSVEELTLAFYEILRHGGFTTGGMNFDAKVRRQSVDPEDLFHGHIGAID
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHCCCCHHHH
VLALALERAAVLVENDRLDALRRRRYAQWDSEFGRKILAGGYSLQSLAADALARGVNPQH
HHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHCCCCCC
ASGAQERLENIVNQAIYALR
CCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA