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The map label for this gene is xylF [H]

Identifier: 83720424

GI number: 83720424

Start: 2634434

End: 2635462

Strand: Direct

Name: xylF [H]

Synonym: BTH_I2339

Alternate gene names: 83720424

Gene position: 2634434-2635462 (Clockwise)

Preceding gene: 161723139

Following gene: 83720437

Centisome position: 69.16

GC content: 65.99

Gene sequence:

>1029_bases
ATGAGATCCGTCACGCGTCGTACCGTATTGAGTTCGCTTGCCGGCGCCGCGGCGCTGGCGGCGCTGGCGCTCGCCGCGCC
GCTCGCGCACGCGAGCAAGGACAAGCCGGAGATCGGCTTTTGCATCGACGACCTTCGCGTGGAACGCTGGTCGCGCGACC
GCGATTATTTCGTCGCGGCCGCGACGAAGCTCGGCGCGAAGGTGTCGGTGCAGTCGGCGGACGCGAGCGAGGAGCGGCAG
ATCTCGCAGATCGAAAACCTGATCTCGCGAGGCGTCGACGTGATCGTGATCGTGCCGTTCAATTCGAAGACGCTCGGCAA
CGTCGTCGCCGAAGCGAAGAGGGCGGGCATCAAGATCGTGTCGTACGACCGGCTGATCCTCGACGCCGACGTCGACGCGT
ACATCTCGTTCGACAACGTGAAGGTCGGCGAGCTGCAGGCGCGGGGCGTCTACGACGCGAAGCCGAAGGGCAACTACTTC
CTGCTCGGCGGCGCGCCCACCGACAACAACGCGAAGATGCTGCGCGAAGGACAGTTGAAGGTGCTCAAGCCCGCGATCGA
CCGCGGCGACATCCGGATCGTCGGCCAGCAGTGGGTGCCCGAATGGAGCGCGTCGACCGCGCTGCGCATCGTCGAGGATG
CGCTGACCGCGAACGACAACAGGATCGACGCGATCGTCGCATCGAACGACGGCACCGCGGGCGGCGCGATCCAGGCGCTG
GCCGCGCAGCATCTCGCGGGCAAGGTGCCGGTGTCGGGGCAGGACGCGGATCTCGCCGCGCTCAGGCGCGTGATCGCCGG
CACGCAGACGATGACTGTCTATAAACCGCTGAAGCTGATCGCAAGCGAAGCCGCGAGGCTCGCCGTGGATCTCGCGAAAG
GCACGAAGCCCGCGTACAACGCGCAATACGACAACGGCAAGAAGAAGGTCGATACGGTGCTGCTGCAGCCGACGCTGCTG
ACCAAGCGCAACGTCGACGTCGTCGTGAAGGACGGCTTCTACACGCAGGCGCAACTGGCGGGCCAGTAA

Upstream 100 bases:

>100_bases
TTCCGGCCGCGCGGCGCAGCGCCGCGCGCTGACACGGGCGGCGCATGCCGGTTGCTGCCCGCCGTTTCGTGCGTTCGTCC
AACAAGAGAGGAGAGCAGAC

Downstream 100 bases:

>100_bases
CGGCGACTCGCGCGCGGCCGGCCTCGGCTCGGGCCGCGCGCACACTGCGAGGCATGAACGTATGACCGAACCCTTGCTGA
CGATGCGCGGCATCGTCAAG

Product: D-xylose ABC transporter periplasmic-D xylose binding protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRSVTRRTVLSSLAGAAALAALALAAPLAHASKDKPEIGFCIDDLRVERWSRDRDYFVAAATKLGAKVSVQSADASEERQ
ISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKRAGIKIVSYDRLILDADVDAYISFDNVKVGELQARGVYDAKPKGNYF
LLGGAPTDNNAKMLREGQLKVLKPAIDRGDIRIVGQQWVPEWSASTALRIVEDALTANDNRIDAIVASNDGTAGGAIQAL
AAQHLAGKVPVSGQDADLAALRRVIAGTQTMTVYKPLKLIASEAARLAVDLAKGTKPAYNAQYDNGKKKVDTVLLQPTLL
TKRNVDVVVKDGFYTQAQLAGQ

Sequences:

>Translated_342_residues
MRSVTRRTVLSSLAGAAALAALALAAPLAHASKDKPEIGFCIDDLRVERWSRDRDYFVAAATKLGAKVSVQSADASEERQ
ISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKRAGIKIVSYDRLILDADVDAYISFDNVKVGELQARGVYDAKPKGNYF
LLGGAPTDNNAKMLREGQLKVLKPAIDRGDIRIVGQQWVPEWSASTALRIVEDALTANDNRIDAIVASNDGTAGGAIQAL
AAQHLAGKVPVSGQDADLAALRRVIAGTQTMTVYKPLKLIASEAARLAVDLAKGTKPAYNAQYDNGKKKVDTVLLQPTLL
TKRNVDVVVKDGFYTQAQLAGQ
>Mature_342_residues
MRSVTRRTVLSSLAGAAALAALALAAPLAHASKDKPEIGFCIDDLRVERWSRDRDYFVAAATKLGAKVSVQSADASEERQ
ISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKRAGIKIVSYDRLILDADVDAYISFDNVKVGELQARGVYDAKPKGNYF
LLGGAPTDNNAKMLREGQLKVLKPAIDRGDIRIVGQQWVPEWSASTALRIVEDALTANDNRIDAIVASNDGTAGGAIQAL
AAQHLAGKVPVSGQDADLAALRRVIAGTQTMTVYKPLKLIASEAARLAVDLAKGTKPAYNAQYDNGKKKVDTVLLQPTLL
TKRNVDVVVKDGFYTQAQLAGQ

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=312, Percent_Identity=60.2564102564103, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1790526, Length=247, Percent_Identity=29.5546558704453, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790192, Length=228, Percent_Identity=25.8771929824561, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36576; Mature: 36576

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVTRRTVLSSLAGAAALAALALAAPLAHASKDKPEIGFCIDDLRVERWSRDRDYFVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCEEEEE
ATKLGAKVSVQSADASEERQISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKRAGIKIV
EHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCEEEE
SYDRLILDADVDAYISFDNVKVGELQARGVYDAKPKGNYFLLGGAPTDNNAKMLREGQLK
EECEEEEECCCCEEEEECCEEECCEEECCCCCCCCCCCEEEEECCCCCCCHHHHHCCCEE
VLKPAIDRGDIRIVGQQWVPEWSASTALRIVEDALTANDNRIDAIVASNDGTAGGAIQAL
EECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
AAQHLAGKVPVSGQDADLAALRRVIAGTQTMTVYKPLKLIASEAARLAVDLAKGTKPAYN
HHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AQYDNGKKKVDTVLLQPTLLTKRNVDVVVKDGFYTQAQLAGQ
CCCCCCCCEEHEEEECCCEECCCCCEEEEECCCEEEHEECCC
>Mature Secondary Structure
MRSVTRRTVLSSLAGAAALAALALAAPLAHASKDKPEIGFCIDDLRVERWSRDRDYFVAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHCCCCCEEEEE
ATKLGAKVSVQSADASEERQISQIENLISRGVDVIVIVPFNSKTLGNVVAEAKRAGIKIV
EHHCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCEEEE
SYDRLILDADVDAYISFDNVKVGELQARGVYDAKPKGNYFLLGGAPTDNNAKMLREGQLK
EECEEEEECCCCEEEEECCEEECCEEECCCCCCCCCCCEEEEECCCCCCCHHHHHCCCEE
VLKPAIDRGDIRIVGQQWVPEWSASTALRIVEDALTANDNRIDAIVASNDGTAGGAIQAL
EECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHH
AAQHLAGKVPVSGQDADLAALRRVIAGTQTMTVYKPLKLIASEAARLAVDLAKGTKPAYN
HHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AQYDNGKKKVDTVLLQPTLLTKRNVDVVVKDGFYTQAQLAGQ
CCCCCCCCEEHEEEECCCEECCCCCEEEEECCCEEEHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]