| Definition | Moorella thermoacetica ATCC 39073, complete genome. |
|---|---|
| Accession | NC_007644 |
| Length | 2,628,784 |
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The map label for this gene is pucD [H]
Identifier: 83590829
GI number: 83590829
Start: 2083615
End: 2086176
Strand: Reverse
Name: pucD [H]
Synonym: Moth_1999
Alternate gene names: 83590829
Gene position: 2086176-2083615 (Counterclockwise)
Preceding gene: 83590830
Following gene: 83590828
Centisome position: 79.36
GC content: 63.47
Gene sequence:
>2562_bases ATGCACCTGCAATTGCTAGTAAATGGACAGCAGCGGGAAGTGGATGTCAATGAGGAAGCCACCTTGCTGGAGGTATTGCG GGAGCATCTGCGCCTGACGGGAGCCAAAAACGGCTGCGGTGAGGGTACTTGCGGCGCCTGCACGGTAATCATGGGAGGCA AGGCGGTACGGGCCTGCCGGACCCCGGTGGCCAGGGCCGCCGGCCAGGAGATTATAACCGTTGAAGGCCTGACGCCACGG GAGAAGGAGATTTACGCCTGGGCCTTTACGGCGGCCGGGGCCGTCCAGTGCGGCTTTTGCACCCCGGGGATGGTTATGGA GGCCAAAGCCCTCCTGGACCGGCAGCCGGATCCTGGCGAGGCGGAAATCCGCCAGGCCCTGAAGGCCCATCTCTGCCGTT GTACCGGCTACCAGAAAATCATTACCGCCGTACGCCTGGCAGGACAGGCCTTGCGGGGTGAAATCGAGCCCTACCGGGGC GAGCCGGCGGGCCTGGGCAAGGCCTTCTTCCGTCCCGATGCCCCACCCAAGGTCCTGGGGGAAGCCGTCTTTGTCGACGA TATGCAGGTGCCCGGTATGCTCTACGGCGCTGTTTTCCGCCTGCCTGTAGCCAGAGCGAGGATTAAAGGCATAGACACCA CGGTCGCCAGGAAACAGCCCGGGGTAGTGGCCGTCCTCACGGCGGATGATATTCCCGGCAAGCGTTACCAGGGGCATATT TTTAAAGATTGGCCGGCCCTGGTGGCTGTGGGCGAAGAAACCAGGTACGCCGGGGACGCCCTGGCCCTGGTGGCAGCTAA ATCAACCCGGGAAGCGCGAGCGGCCCTTGATTTTATTAAAGTAGATTATGAAGAACTACCGCCCCTGACCTCGCCGGAAG AGGCCCTGGCGCCGGGAGCGCCGGCCCTGCATCCCCGTGGCAATCTCCTGAGCGAGACCCAGGTGAAAAAGGGCGACGCC GAGGCCGCCCTGCGGTCCTGTGCCCATGTAGTCACCAACACCTACCAAACGCCCTTTACAGAACACGCTTTCCTGGAACC GGAGAGCGCCCTGGCCGTTCCGGAAAACGGCGGCCTGACAGTTTACACCAGCACCCAGGGGGTCTACGAGATCCATGCCC AGCTGGTTTCCCTCCTGAACCTGCCGCCGGATAAGATACGGGTAATAAACAGGTTCGTTGGCGGCGGTTTTGGCGGCAAA GAGGATCTGAGCGTCCAGCATCACGCCGCCCTCCTGGCCTGGGCGACACAGAGGCCGGTTAAGCTCACCTGGACCAGACG GGAGAGTATCCTCTGCCACCCCAAACGCCATGCCATGACCATCACCATGACAACCGGCTGCGATGCCGCTGGGAACCTGG TAGCCCTGGTGGCCGACCTGGTGGCCGATACCGGCGCCTATGCTTCCCTGGGAGCCCAGGTGCTGGAACGGGCCTGTACC CACGCCACCGGTCCTTACCGCATCCCCAACGTTACCATTCGCGGCCGGGCCGTCTACACCAATAACCCGCCGGCCGGTGC CTTCCGGGGCTTTGGCGTGCCCCAGTCCAACTTCGCCATGGAGACCCAGATGAACCTCCTGGCAGCAGCGACCGGCCTGT CTCCCTGGCAGATTCGCTGGCAGAACGCCCTGGAGCCGGGGGACACCCTGGCCACCGGCCAAGTGGTCAGTGAGGATATC GGCATTAAAGAGACCCTGCTGGCGGTCAAAGAGGCTTACGAATCCAGTCCCTGCGCTGGTATTGCCTGTGCCTTTAAGAA TGTCGGTCTGGGGGTGGGCACCCCGGATACAGGCCGGGCCAACCTGGCTGTCGAAGGGGGGAGGGTGAGGATCTATTCCA GTGCGGCCTGTATGGGCCAGGGCCTGGAATCCGTTCTTATTCAGATAGTTGCTGAAACCACCGGTTTGCCGGCGGAGGTT ATTGACTGCGTCCTCTCCGACACGGCCCTTACTCCGGACGCCGGCTGTACCACCGCCTCCCGCCAGAGCCTCTTTACCGG CGAGGCCACGCGCCGGGCGGCGGCGGCCCTGGCGGAAGCCCTACGGGGCCGTACCCTGGCTGAACTGGAGGGCCGGGTCT TCCGGGGCGAGTTCCACGGGGTTACCGATCCCCTTAATTCTACCCGGGAACACCCCCTGACCCATGTGGGCTACAGCTAT GCCACCCAGGTGGTACTCCTGGACGACGCCGGTAAGGTAAGCAAAGTGGTGGCTGCTTACGATATAGGACGGGCCATCAA CCCCTTGAACCTGGAGGGCCAGATTGAGGGAGGTATCGTGATGGGCCTGGGCTACGCCCTGACGGAAGATTTTCCCCTGC GGGAGGGCATTCCCGAGCGTCAGACTCTGGGCCGCCTGGGCCTCCTGCGGTCCCACCAGGTGCCGGCCATGGAGGTCCAC CTCATAGAGAAGGGCGGTACCCCTTATGCTTACGGGGCCAAGGGTGTCGGCGAACTGGCCACCATTCCCACGGCAGCAGC GGTGGCCGGCGCCTATTACCGCTTCGACGGCAAGGTGCGCTTGAGCCTTCCCCTGGAAGGAACGCCGTACACCCGGGGTT AG
Upstream 100 bases:
>100_bases GGTCATAGTGACCAGGGGCATATCCCATCCGTGTATTTTCAGGGGGAATCGTGCCTGGCAGACTGGCAGGCTGCCAGTAT ACCAGATGGGGGGGAAGGAT
Downstream 100 bases:
>100_bases GTTGAAGATAACGTTGTTACGTGGCAGCGTGGGATAGAACCCTCCGCGGACAGTAGAGATACCTTGTGGGAAGAGAGAGT TTTTACGGGAGAGATGACTC
Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein
Products: NA
Alternate protein names: XDHase subunit D [H]
Number of amino acids: Translated: 853; Mature: 853
Protein sequence:
>853_residues MHLQLLVNGQQREVDVNEEATLLEVLREHLRLTGAKNGCGEGTCGACTVIMGGKAVRACRTPVARAAGQEIITVEGLTPR EKEIYAWAFTAAGAVQCGFCTPGMVMEAKALLDRQPDPGEAEIRQALKAHLCRCTGYQKIITAVRLAGQALRGEIEPYRG EPAGLGKAFFRPDAPPKVLGEAVFVDDMQVPGMLYGAVFRLPVARARIKGIDTTVARKQPGVVAVLTADDIPGKRYQGHI FKDWPALVAVGEETRYAGDALALVAAKSTREARAALDFIKVDYEELPPLTSPEEALAPGAPALHPRGNLLSETQVKKGDA EAALRSCAHVVTNTYQTPFTEHAFLEPESALAVPENGGLTVYTSTQGVYEIHAQLVSLLNLPPDKIRVINRFVGGGFGGK EDLSVQHHAALLAWATQRPVKLTWTRRESILCHPKRHAMTITMTTGCDAAGNLVALVADLVADTGAYASLGAQVLERACT HATGPYRIPNVTIRGRAVYTNNPPAGAFRGFGVPQSNFAMETQMNLLAAATGLSPWQIRWQNALEPGDTLATGQVVSEDI GIKETLLAVKEAYESSPCAGIACAFKNVGLGVGTPDTGRANLAVEGGRVRIYSSAACMGQGLESVLIQIVAETTGLPAEV IDCVLSDTALTPDAGCTTASRQSLFTGEATRRAAAALAEALRGRTLAELEGRVFRGEFHGVTDPLNSTREHPLTHVGYSY ATQVVLLDDAGKVSKVVAAYDIGRAINPLNLEGQIEGGIVMGLGYALTEDFPLREGIPERQTLGRLGLLRSHQVPAMEVH LIEKGGTPYAYGAKGVGELATIPTAAAVAGAYYRFDGKVRLSLPLEGTPYTRG
Sequences:
>Translated_853_residues MHLQLLVNGQQREVDVNEEATLLEVLREHLRLTGAKNGCGEGTCGACTVIMGGKAVRACRTPVARAAGQEIITVEGLTPR EKEIYAWAFTAAGAVQCGFCTPGMVMEAKALLDRQPDPGEAEIRQALKAHLCRCTGYQKIITAVRLAGQALRGEIEPYRG EPAGLGKAFFRPDAPPKVLGEAVFVDDMQVPGMLYGAVFRLPVARARIKGIDTTVARKQPGVVAVLTADDIPGKRYQGHI FKDWPALVAVGEETRYAGDALALVAAKSTREARAALDFIKVDYEELPPLTSPEEALAPGAPALHPRGNLLSETQVKKGDA EAALRSCAHVVTNTYQTPFTEHAFLEPESALAVPENGGLTVYTSTQGVYEIHAQLVSLLNLPPDKIRVINRFVGGGFGGK EDLSVQHHAALLAWATQRPVKLTWTRRESILCHPKRHAMTITMTTGCDAAGNLVALVADLVADTGAYASLGAQVLERACT HATGPYRIPNVTIRGRAVYTNNPPAGAFRGFGVPQSNFAMETQMNLLAAATGLSPWQIRWQNALEPGDTLATGQVVSEDI GIKETLLAVKEAYESSPCAGIACAFKNVGLGVGTPDTGRANLAVEGGRVRIYSSAACMGQGLESVLIQIVAETTGLPAEV IDCVLSDTALTPDAGCTTASRQSLFTGEATRRAAAALAEALRGRTLAELEGRVFRGEFHGVTDPLNSTREHPLTHVGYSY ATQVVLLDDAGKVSKVVAAYDIGRAINPLNLEGQIEGGIVMGLGYALTEDFPLREGIPERQTLGRLGLLRSHQVPAMEVH LIEKGGTPYAYGAKGVGELATIPTAAAVAGAYYRFDGKVRLSLPLEGTPYTRG >Mature_853_residues MHLQLLVNGQQREVDVNEEATLLEVLREHLRLTGAKNGCGEGTCGACTVIMGGKAVRACRTPVARAAGQEIITVEGLTPR EKEIYAWAFTAAGAVQCGFCTPGMVMEAKALLDRQPDPGEAEIRQALKAHLCRCTGYQKIITAVRLAGQALRGEIEPYRG EPAGLGKAFFRPDAPPKVLGEAVFVDDMQVPGMLYGAVFRLPVARARIKGIDTTVARKQPGVVAVLTADDIPGKRYQGHI FKDWPALVAVGEETRYAGDALALVAAKSTREARAALDFIKVDYEELPPLTSPEEALAPGAPALHPRGNLLSETQVKKGDA EAALRSCAHVVTNTYQTPFTEHAFLEPESALAVPENGGLTVYTSTQGVYEIHAQLVSLLNLPPDKIRVINRFVGGGFGGK EDLSVQHHAALLAWATQRPVKLTWTRRESILCHPKRHAMTITMTTGCDAAGNLVALVADLVADTGAYASLGAQVLERACT HATGPYRIPNVTIRGRAVYTNNPPAGAFRGFGVPQSNFAMETQMNLLAAATGLSPWQIRWQNALEPGDTLATGQVVSEDI GIKETLLAVKEAYESSPCAGIACAFKNVGLGVGTPDTGRANLAVEGGRVRIYSSAACMGQGLESVLIQIVAETTGLPAEV IDCVLSDTALTPDAGCTTASRQSLFTGEATRRAAAALAEALRGRTLAELEGRVFRGEFHGVTDPLNSTREHPLTHVGYSY ATQVVLLDDAGKVSKVVAAYDIGRAINPLNLEGQIEGGIVMGLGYALTEDFPLREGIPERQTLGRLGLLRSHQVPAMEVH LIEKGGTPYAYGAKGVGELATIPTAAAVAGAYYRFDGKVRLSLPLEGTPYTRG
Specific function: Oxidizes hypoxanthine and xanthine to uric acid [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI91823271, Length=640, Percent_Identity=27.5, Blast_Score=199, Evalue=1e-50, Organism=Homo sapiens, GI71773480, Length=639, Percent_Identity=26.2910798122066, Blast_Score=159, Evalue=8e-39, Organism=Escherichia coli, GI1789230, Length=741, Percent_Identity=30.4993252361673, Blast_Score=281, Evalue=1e-76, Organism=Escherichia coli, GI1789246, Length=942, Percent_Identity=24.9469214437367, Blast_Score=217, Evalue=2e-57, Organism=Escherichia coli, GI1786478, Length=734, Percent_Identity=26.4305177111717, Blast_Score=125, Evalue=1e-29, Organism=Escherichia coli, GI1786480, Length=172, Percent_Identity=36.046511627907, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1789232, Length=145, Percent_Identity=41.3793103448276, Blast_Score=98, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17540638, Length=660, Percent_Identity=26.3636363636364, Blast_Score=181, Evalue=2e-45, Organism=Caenorhabditis elegans, GI17539860, Length=150, Percent_Identity=44.6666666666667, Blast_Score=116, Evalue=5e-26, Organism=Caenorhabditis elegans, GI32566215, Length=150, Percent_Identity=44, Blast_Score=115, Evalue=7e-26, Organism=Drosophila melanogaster, GI17737937, Length=693, Percent_Identity=28.4271284271284, Blast_Score=178, Evalue=2e-44, Organism=Drosophila melanogaster, GI24647193, Length=628, Percent_Identity=25.1592356687898, Blast_Score=125, Evalue=1e-28, Organism=Drosophila melanogaster, GI24647199, Length=645, Percent_Identity=22.6356589147287, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24647201, Length=630, Percent_Identity=23.3333333333333, Blast_Score=96, Evalue=9e-20, Organism=Drosophila melanogaster, GI24647197, Length=648, Percent_Identity=22.8395061728395, Blast_Score=91, Evalue=4e-18, Organism=Drosophila melanogaster, GI24647195, Length=648, Percent_Identity=22.8395061728395, Blast_Score=91, Evalue=5e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR017609 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.17.1.4 [H]
Molecular weight: Translated: 90684; Mature: 90684
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS00197 2FE2S_FER_1 ; PS51085 2FE2S_FER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLQLLVNGQQREVDVNEEATLLEVLREHLRLTGAKNGCGEGTCGACTVIMGGKAVRACR CEEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHH TPVARAAGQEIITVEGLTPREKEIYAWAFTAAGAVQCGFCTPGMVMEAKALLDRQPDPGE CHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCCCCCH AEIRQALKAHLCRCTGYQKIITAVRLAGQALRGEIEPYRGEPAGLGKAFFRPDAPPKVLG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHC EAVFVDDMQVPGMLYGAVFRLPVARARIKGIDTTVARKQPGVVAVLTADDIPGKRYQGHI CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCE FKDWPALVAVGEETRYAGDALALVAAKSTREARAALDFIKVDYEELPPLTSPEEALAPGA EECCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCCHHHHCCCC PALHPRGNLLSETQVKKGDAEAALRSCAHVVTNTYQTPFTEHAFLEPESALAVPENGGLT CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEECCCCCCEE VYTSTQGVYEIHAQLVSLLNLPPDKIRVINRFVGGGFGGKEDLSVQHHAALLAWATQRPV EEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEHHCCCCE KLTWTRRESILCHPKRHAMTITMTTGCDAAGNLVALVADLVADTGAYASLGAQVLERACT EEEEECCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH HATGPYRIPNVTIRGRAVYTNNPPAGAFRGFGVPQSNFAMETQMNLLAAATGLSPWQIRW CCCCCEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE QNALEPGDTLATGQVVSEDIGIKETLLAVKEAYESSPCAGIACAFKNVGLGVGTPDTGRA CCCCCCCCCEECCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCCCCE NLAVEGGRVRIYSSAACMGQGLESVLIQIVAETTGLPAEVIDCVLSDTALTPDAGCTTAS EEEEECCEEEEEECHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC RQSLFTGEATRRAAAALAEALRGRTLAELEGRVFRGEFHGVTDPLNSTREHPLTHVGYSY HHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCCCHHCCCCCCCCCCC ATQVVLLDDAGKVSKVVAAYDIGRAINPLNLEGQIEGGIVMGLGYALTEDFPLREGIPER EEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEECCCEEEECCHHHCCCCCHHCCCCCH QTLGRLGLLRSHQVPAMEVHLIEKGGTPYAYGAKGVGELATIPTAAAVAGAYYRFDGKVR HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHCCHHHHHHCEEEEECCEEE LSLPLEGTPYTRG EEECCCCCCCCCC >Mature Secondary Structure MHLQLLVNGQQREVDVNEEATLLEVLREHLRLTGAKNGCGEGTCGACTVIMGGKAVRACR CEEEEEECCCCCEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHH TPVARAAGQEIITVEGLTPREKEIYAWAFTAAGAVQCGFCTPGMVMEAKALLDRQPDPGE CHHHHHCCCEEEEEECCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHHCCCCCCCH AEIRQALKAHLCRCTGYQKIITAVRLAGQALRGEIEPYRGEPAGLGKAFFRPDAPPKVLG HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCHHHHC EAVFVDDMQVPGMLYGAVFRLPVARARIKGIDTTVARKQPGVVAVLTADDIPGKRYQGHI CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCE FKDWPALVAVGEETRYAGDALALVAAKSTREARAALDFIKVDYEELPPLTSPEEALAPGA EECCCEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCHHHCCCCCCCHHHHCCCC PALHPRGNLLSETQVKKGDAEAALRSCAHVVTNTYQTPFTEHAFLEPESALAVPENGGLT CCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCEECCCCCCEE VYTSTQGVYEIHAQLVSLLNLPPDKIRVINRFVGGGFGGKEDLSVQHHAALLAWATQRPV EEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHEEEEHHCCCCE KLTWTRRESILCHPKRHAMTITMTTGCDAAGNLVALVADLVADTGAYASLGAQVLERACT EEEEECCCCEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH HATGPYRIPNVTIRGRAVYTNNPPAGAFRGFGVPQSNFAMETQMNLLAAATGLSPWQIRW CCCCCEECCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE QNALEPGDTLATGQVVSEDIGIKETLLAVKEAYESSPCAGIACAFKNVGLGVGTPDTGRA CCCCCCCCCEECCCHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCCCCE NLAVEGGRVRIYSSAACMGQGLESVLIQIVAETTGLPAEVIDCVLSDTALTPDAGCTTAS EEEEECCEEEEEECHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC RQSLFTGEATRRAAAALAEALRGRTLAELEGRVFRGEFHGVTDPLNSTREHPLTHVGYSY HHHHHCCHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCCCCCCCCCHHCCCCCCCCCCC ATQVVLLDDAGKVSKVVAAYDIGRAINPLNLEGQIEGGIVMGLGYALTEDFPLREGIPER EEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEECCCEEEECCHHHCCCCCHHCCCCCH QTLGRLGLLRSHQVPAMEVHLIEKGGTPYAYGAKGVGELATIPTAAAVAGAYYRFDGKVR HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHCCHHHHHHCEEEEECCEEE LSLPLEGTPYTRG EEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]