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The map label for this gene is yagI [H]

Identifier: 83590615

GI number: 83590615

Start: 1834871

End: 1835689

Strand: Reverse

Name: yagI [H]

Synonym: Moth_1780

Alternate gene names: 83590615

Gene position: 1835689-1834871 (Counterclockwise)

Preceding gene: 83590617

Following gene: 83590614

Centisome position: 69.83

GC content: 60.32

Gene sequence:

>819_bases
GTGGAGGCAAAAAAGACCAGTAGGAAAGACCATCCACCCCAGATACGCTCGGTGGCCAAGGCCCTGATGATCCTTGATCT
CCTGGCGGCCAGCCAGCGGGAGATGTCCCTGGCGGAGCTGGCCCGGGAGATGGAACTACCTAAAAGTACCCTGCACGGCC
TGCTATCTACCCTGCGGGACTATGGCTATATCGAGCAGTCGGCCTTCGACGGCCGTTACCGGCTGGGGATTCGCCTGTTT
GAGATCGGCAACGCCGTCGCCAACAACTGGGACGTCCGCCGGGTGGCCGCCCCCTATATCCAGCACCTGGTAGAAGAGTT
GGAGGAGACGGTGCACCTGGTTATCCTGGATAAGGGCGAGGTCTTATATATCGATAAGCGGGAGAGCCGCCAATCCCTGC
GTATTGTTTCCCAGGTGGGCATGCGCCTGCCGGCTCATTGCACAGGGGTGGGGAAGGTGCTCCTGGCTTACCTTCACCCC
AGCGAAGTAAAGCGCATCATTGCTCTTAAGGGATTGCCCCGCTACACCAGGAATACCATTACCGACCCGCGCCGGCTGGA
AGCGGAATTAGAGAAAATCCGTTCTCAGGGGTACGCCATTGATAATGAAGAGATCATGGACGGTCTTCGTTGCGTGGCGG
CGCCCCTGCGGGAACACAACGGCAAGGTTTGCGCGGCCATCAGCGTCTCCGGGCCGGCAGCCCGGATGGACGGAGAGAGG
CTGCAGCTGGCGATAGATCGTATTACCCGGACGGCGGCCGAGATTTCGGCCGGGTTGGGTTACCGGCCCGTCGTGGAGAG
TGATGCCAGTGGAGCTTAG

Upstream 100 bases:

>100_bases
TCGAATATTACCAGGCCTGTAAGGGTGGTTTTTTAGGAATGAATATTGTATACTTAAAATAACGAACATCGTTTGACATA
ACCGAATGGAGGCCGTTCCC

Downstream 100 bases:

>100_bases
GGATTTCCTCTTTGCCCCCCTGGAGGGGAAAAAATTCATCTTTAAGATAACGTCCCGGGAAAAAGGGATCTTTTCCGGGG
CTGCCCGGTTGGAGCAACAG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MEAKKTSRKDHPPQIRSVAKALMILDLLAASQREMSLAELAREMELPKSTLHGLLSTLRDYGYIEQSAFDGRYRLGIRLF
EIGNAVANNWDVRRVAAPYIQHLVEELEETVHLVILDKGEVLYIDKRESRQSLRIVSQVGMRLPAHCTGVGKVLLAYLHP
SEVKRIIALKGLPRYTRNTITDPRRLEAELEKIRSQGYAIDNEEIMDGLRCVAAPLREHNGKVCAAISVSGPAARMDGER
LQLAIDRITRTAAEISAGLGYRPVVESDASGA

Sequences:

>Translated_272_residues
MEAKKTSRKDHPPQIRSVAKALMILDLLAASQREMSLAELAREMELPKSTLHGLLSTLRDYGYIEQSAFDGRYRLGIRLF
EIGNAVANNWDVRRVAAPYIQHLVEELEETVHLVILDKGEVLYIDKRESRQSLRIVSQVGMRLPAHCTGVGKVLLAYLHP
SEVKRIIALKGLPRYTRNTITDPRRLEAELEKIRSQGYAIDNEEIMDGLRCVAAPLREHNGKVCAAISVSGPAARMDGER
LQLAIDRITRTAAEISAGLGYRPVVESDASGA
>Mature_272_residues
MEAKKTSRKDHPPQIRSVAKALMILDLLAASQREMSLAELAREMELPKSTLHGLLSTLRDYGYIEQSAFDGRYRLGIRLF
EIGNAVANNWDVRRVAAPYIQHLVEELEETVHLVILDKGEVLYIDKRESRQSLRIVSQVGMRLPAHCTGVGKVLLAYLHP
SEVKRIIALKGLPRYTRNTITDPRRLEAELEKIRSQGYAIDNEEIMDGLRCVAAPLREHNGKVCAAISVSGPAARMDGER
LQLAIDRITRTAAEISAGLGYRPVVESDASGA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=249, Percent_Identity=38.1526104417671, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1788131, Length=251, Percent_Identity=37.8486055776892, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI87082359, Length=249, Percent_Identity=32.5301204819277, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1786715, Length=263, Percent_Identity=33.0798479087452, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1790752, Length=228, Percent_Identity=33.3333333333333, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789999, Length=263, Percent_Identity=29.277566539924, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1788581, Length=259, Percent_Identity=32.4324324324324, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 30289; Mature: 30289

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAKKTSRKDHPPQIRSVAKALMILDLLAASQREMSLAELAREMELPKSTLHGLLSTLRD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YGYIEQSAFDGRYRLGIRLFEIGNAVANNWDVRRVAAPYIQHLVEELEETVHLVILDKGE
CCCHHHHCCCCEEECCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
VLYIDKRESRQSLRIVSQVGMRLPAHCTGVGKVLLAYLHPSEVKRIIALKGLPRYTRNTI
EEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHCC
TDPRRLEAELEKIRSQGYAIDNEEIMDGLRCVAAPLREHNGKVCAAISVSGPAARMDGER
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCHH
LQLAIDRITRTAAEISAGLGYRPVVESDASGA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEAKKTSRKDHPPQIRSVAKALMILDLLAASQREMSLAELAREMELPKSTLHGLLSTLRD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
YGYIEQSAFDGRYRLGIRLFEIGNAVANNWDVRRVAAPYIQHLVEELEETVHLVILDKGE
CCCHHHHCCCCEEECCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEEECCCC
VLYIDKRESRQSLRIVSQVGMRLPAHCTGVGKVLLAYLHPSEVKRIIALKGLPRYTRNTI
EEEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHCC
TDPRRLEAELEKIRSQGYAIDNEEIMDGLRCVAAPLREHNGKVCAAISVSGPAARMDGER
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCCHH
LQLAIDRITRTAAEISAGLGYRPVVESDASGA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]