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The map label for this gene is secDF [H]

Identifier: 83590527

GI number: 83590527

Start: 1729095

End: 1730480

Strand: Reverse

Name: secDF [H]

Synonym: Moth_1691

Alternate gene names: 83590527

Gene position: 1730480-1729095 (Counterclockwise)

Preceding gene: 83590528

Following gene: 83590526

Centisome position: 65.83

GC content: 57.5

Gene sequence:

>1386_bases
ATGTGGCGAAGGTGGCACTCACAGCAATTGACGGTAAACTCAGGCCGGGGTTATAATAGGATGTCCGCTAGTTTTAATTT
GTCAAGGGAGGAAAGAGTTTTGGCAGGGGGAAAAGGAGCAGGCGGCTTTTTAAAGCTCGCCGTTGTTTTTCTCGCCATCC
TGGCGATTGGTATCGGGGTCTTTAAACCCCTGATTAATGCCCAGCGCCTGGGCCTGGACCTCAAAGGCGGGGTTCACGTC
CTCATACAGGCCCAGAGCACACCGGACCACGCGGTCACCCCCGACGATATGGCCGCCCTGGAGCGGGTCATGCGCGACCG
GGTGGACCAGCTGGGGATAGCCGAACCGGTAATCCAGCGGGAGGGTAGTGACCGCCTGATTATCGAACTGGCCGGGGTCA
GTAACCCGGAGGAAGCCATTAAGATGATCGGCAAGACGGCCCAGCTGGAGTTTAAGACCAGCGACGGCCAGGTGGTAGTC
TCGGGAAAGGACTTGAAGGACGCCAAGGCCATCATTGACCAGCAGACCCGCGAACCCCAGATTACCCTGCAGTTCAATGC
CGAAGGCACGAAGAAGTTTGCCGATGTCACAAAGAAACTGGCCAGCAGTTACCCCTACGGGGATCCCAAGAGAGCGATCG
GTATTTATTTAGACCAGCAGCTGCTCACCAACCCCCAGGTGAAGGAAGCCATACCCAACGGCCAGGCGATCATCAGCGGC
GGTTTTGCCAATTTTGAGGAGGCCGCCAACCTGGCGGCCCTCCTGCGGGGCGGTGCCCTGCCGGTACCGGTCCAGATCAT
CGAGCGCCGGACTGTAGGCCCGACCCTGGGGGCGGATTCTCTGGCCAAGAGCAAGACGGCTATTATTGTGGGCCTGATCG
CTATCGCCCTTTTCATGCTGCTTATATACCGTTTGCCGGGCGTAGTGGCCGACTTTTCCCTGATTGTGTACGGTTTGATC
GTCATGGCTGTCCTCTGGGGGTTGAAGGCCACCCTGACACTACCGGGAATAGCCGGGCTATTACTGTCGGTAGGTATGGC
TGTGGACGCCAACATTATTATCTACGAACACATCAAAGAAGAGTTGCGTAACGGTAAGACCCTGAGGGCGGCCATAGACG
CCGGCTTTAAGCGGGCCTTTACCACCATCTTTGACTCCAACGCCACTACGGTGCTGGCGGCCATCGTTCTCTACTTCCTG
GGGAGCGGTACGGTGCGCGGTTTTGCCATTACCCTGTCCCTGGGCATTGCGGCCAGTATGTTTACCGCCATTACCCTGAC
CAGGTTCCTGCTGCACCTGGTGGTAGGGGTGCCGGCCTTCCACAACCTCTGGCTCTTTGGCGTTAAAGAAGAGCAAATCC
CGGCAGCGGCAAGGGGTGAGATTTAA

Upstream 100 bases:

>100_bases
CTTTTTGACCCGGATGATGATGTGTCGCCGGGCCGCCCGCTTTTTGCACTGTCATTTCGGCCTGGTAGTCAACGATGCCC
GCCTCCTGTGAGGTGTCAGA

Downstream 100 bases:

>100_bases
TGAACTTCAACTTCGATTTTGTCAACCGGCGCAAATGGTGGTATGCCCTGTCGCTGCTGGTCATTATCCCGGGGCTCATT
GCCATGGCCCTGCACCGGCC

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MWRRWHSQQLTVNSGRGYNRMSASFNLSREERVLAGGKGAGGFLKLAVVFLAILAIGIGVFKPLINAQRLGLDLKGGVHV
LIQAQSTPDHAVTPDDMAALERVMRDRVDQLGIAEPVIQREGSDRLIIELAGVSNPEEAIKMIGKTAQLEFKTSDGQVVV
SGKDLKDAKAIIDQQTREPQITLQFNAEGTKKFADVTKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISG
GFANFEEAANLAALLRGGALPVPVQIIERRTVGPTLGADSLAKSKTAIIVGLIAIALFMLLIYRLPGVVADFSLIVYGLI
VMAVLWGLKATLTLPGIAGLLLSVGMAVDANIIIYEHIKEELRNGKTLRAAIDAGFKRAFTTIFDSNATTVLAAIVLYFL
GSGTVRGFAITLSLGIAASMFTAITLTRFLLHLVVGVPAFHNLWLFGVKEEQIPAAARGEI

Sequences:

>Translated_461_residues
MWRRWHSQQLTVNSGRGYNRMSASFNLSREERVLAGGKGAGGFLKLAVVFLAILAIGIGVFKPLINAQRLGLDLKGGVHV
LIQAQSTPDHAVTPDDMAALERVMRDRVDQLGIAEPVIQREGSDRLIIELAGVSNPEEAIKMIGKTAQLEFKTSDGQVVV
SGKDLKDAKAIIDQQTREPQITLQFNAEGTKKFADVTKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISG
GFANFEEAANLAALLRGGALPVPVQIIERRTVGPTLGADSLAKSKTAIIVGLIAIALFMLLIYRLPGVVADFSLIVYGLI
VMAVLWGLKATLTLPGIAGLLLSVGMAVDANIIIYEHIKEELRNGKTLRAAIDAGFKRAFTTIFDSNATTVLAAIVLYFL
GSGTVRGFAITLSLGIAASMFTAITLTRFLLHLVVGVPAFHNLWLFGVKEEQIPAAARGEI
>Mature_461_residues
MWRRWHSQQLTVNSGRGYNRMSASFNLSREERVLAGGKGAGGFLKLAVVFLAILAIGIGVFKPLINAQRLGLDLKGGVHV
LIQAQSTPDHAVTPDDMAALERVMRDRVDQLGIAEPVIQREGSDRLIIELAGVSNPEEAIKMIGKTAQLEFKTSDGQVVV
SGKDLKDAKAIIDQQTREPQITLQFNAEGTKKFADVTKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISG
GFANFEEAANLAALLRGGALPVPVQIIERRTVGPTLGADSLAKSKTAIIVGLIAIALFMLLIYRLPGVVADFSLIVYGLI
VMAVLWGLKATLTLPGIAGLLLSVGMAVDANIIIYEHIKEELRNGKTLRAAIDAGFKRAFTTIFDSNATTVLAAIVLYFL
GSGTVRGFAITLSLGIAASMFTAITLTRFLLHLVVGVPAFHNLWLFGVKEEQIPAAARGEI

Specific function: Required for efficient translocation of secretory pre- proteins under conditions of hypersecretion but is not required for the release of mature proteins from the membrane [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=377, Percent_Identity=36.604774535809, Blast_Score=237, Evalue=9e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 49516; Mature: 49516

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRRWHSQQLTVNSGRGYNRMSASFNLSREERVLAGGKGAGGFLKLAVVFLAILAIGIGV
CCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHH
FKPLINAQRLGLDLKGGVHVLIQAQSTPDHAVTPDDMAALERVMRDRVDQLGIAEPVIQR
HHHHHHHHHCCEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHC
EGSDRLIIELAGVSNPEEAIKMIGKTAQLEFKTSDGQVVVSGKDLKDAKAIIDQQTREPQ
CCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHCCCCCCE
ITLQFNAEGTKKFADVTKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISG
EEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHEEHEECHHHHCCCHHHHHCCCCCEEEEC
GFANFEEAANLAALLRGGALPVPVQIIERRTVGPTLGADSLAKSKTAIIVGLIAIALFML
CCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LIYRLPGVVADFSLIVYGLIVMAVLWGLKATLTLPGIAGLLLSVGMAVDANIIIYEHIKE
HHHHCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHCCCEEEHHHHHH
ELRNGKTLRAAIDAGFKRAFTTIFDSNATTVLAAIVLYFLGSGTVRGFAITLSLGIAASM
HHHCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
FTAITLTRFLLHLVVGVPAFHNLWLFGVKEEQIPAAARGEI
HHHHHHHHHHHHHHHCCCCHHCEEEEECCHHHCCCCCCCCC
>Mature Secondary Structure
MWRRWHSQQLTVNSGRGYNRMSASFNLSREERVLAGGKGAGGFLKLAVVFLAILAIGIGV
CCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHH
FKPLINAQRLGLDLKGGVHVLIQAQSTPDHAVTPDDMAALERVMRDRVDQLGIAEPVIQR
HHHHHHHHHCCEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHC
EGSDRLIIELAGVSNPEEAIKMIGKTAQLEFKTSDGQVVVSGKDLKDAKAIIDQQTREPQ
CCCCEEEEEECCCCCHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHCCCCCCE
ITLQFNAEGTKKFADVTKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISG
EEEEECCCCHHHHHHHHHHHHHCCCCCCCCHHEEHEECHHHHCCCHHHHHCCCCCEEEEC
GFANFEEAANLAALLRGGALPVPVQIIERRTVGPTLGADSLAKSKTAIIVGLIAIALFML
CCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LIYRLPGVVADFSLIVYGLIVMAVLWGLKATLTLPGIAGLLLSVGMAVDANIIIYEHIKE
HHHHCCCHHHHHHHHHHHHHHHHHHHCCHHEEECCHHHHHHHHHHHHHCCCEEEHHHHHH
ELRNGKTLRAAIDAGFKRAFTTIFDSNATTVLAAIVLYFLGSGTVRGFAITLSLGIAASM
HHHCCCEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHH
FTAITLTRFLLHLVVGVPAFHNLWLFGVKEEQIPAAARGEI
HHHHHHHHHHHHHHHCCCCHHCEEEEECCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9694879; 9384377 [H]