Click here to switch to the map view.

The map label for this gene is dmsB [H]

Identifier: 83590235

GI number: 83590235

Start: 1435823

End: 1436371

Strand: Reverse

Name: dmsB [H]

Synonym: Moth_1388

Alternate gene names: 83590235

Gene position: 1436371-1435823 (Counterclockwise)

Preceding gene: 83590236

Following gene: 83590234

Centisome position: 54.64

GC content: 57.38

Gene sequence:

>549_bases
ATGGCTCAACTGGGGTTTTACTACGACATGACTGCCTGCATCGGCTGTAAGACCTGCCAGGTAGCCTGTAAAGATAAAAA
TAACCTGGAGGTGGGGGTGCTCTTTCGCCGGGTCTATACCGTAGAGGGCGGCAAGTTTCCACACCCCTGGTTTTATCACA
TCTCCCTGGGGTGTAACCACTGCGCCCAGGCACCCTGTGTCCGGAATTGTCCTACCGGCGCCCTCTATAAAAGGGAAGAC
GGGATTGTCATGCAGGACCGGAACAAATGCATCGGTTGCCGCTACTGCGTCTGGTCTTGCCCTTACGGTGCCCCGCAGTA
TATCGCCTCCGAGGGTAAGGTGGGCAAATGTAACCTCTGCGCGGATTTAATCGACAGAGGCGAGCAGCCAGCCTGCGTCG
CCGCCTGCATGATGCGCGCCCTGGATTTCGGGGATATTGAGGAGTTGCGCCGGAAATACGGCGGCACGGCGGACGTCAAG
GGCCTGCCGGACGCCAGCATAACCCATCCCTCGATAACCATTCAACCGGCAGATGAGGCCAGGAAATAA

Upstream 100 bases:

>100_bases
CTGGAACTCGTGTAATGTTCAGGTCGAAAAATGGACTGGGGCGCCCTTGCCGCCTGATGACAAGTGGCCCCTGCGCATCG
TTTTTTAGGGAGGCGGGATT

Downstream 100 bases:

>100_bases
GCTAGGCCGCAATTTTATCAACCCCAGGGTTCCGGTAGCCATCAGTAGGGGGTACGCCTGTGCTTATCGAGATCAGCAGG
GAGACGCTGGCGGGCATCAG

Product: 4Fe-4S ferredoxin, iron-sulfur binding

Products: NA

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MAQLGFYYDMTACIGCKTCQVACKDKNNLEVGVLFRRVYTVEGGKFPHPWFYHISLGCNHCAQAPCVRNCPTGALYKRED
GIVMQDRNKCIGCRYCVWSCPYGAPQYIASEGKVGKCNLCADLIDRGEQPACVAACMMRALDFGDIEELRRKYGGTADVK
GLPDASITHPSITIQPADEARK

Sequences:

>Translated_182_residues
MAQLGFYYDMTACIGCKTCQVACKDKNNLEVGVLFRRVYTVEGGKFPHPWFYHISLGCNHCAQAPCVRNCPTGALYKRED
GIVMQDRNKCIGCRYCVWSCPYGAPQYIASEGKVGKCNLCADLIDRGEQPACVAACMMRALDFGDIEELRRKYGGTADVK
GLPDASITHPSITIQPADEARK
>Mature_181_residues
AQLGFYYDMTACIGCKTCQVACKDKNNLEVGVLFRRVYTVEGGKFPHPWFYHISLGCNHCAQAPCVRNCPTGALYKREDG
IVMQDRNKCIGCRYCVWSCPYGAPQYIASEGKVGKCNLCADLIDRGEQPACVAACMMRALDFGDIEELRRKYGGTADVKG
LPDASITHPSITIQPADEARK

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=188, Percent_Identity=46.8085106382979, Blast_Score=184, Evalue=4e-48,
Organism=Escherichia coli, GI1787872, Length=188, Percent_Identity=47.3404255319149, Blast_Score=182, Evalue=1e-47,
Organism=Escherichia coli, GI1787749, Length=193, Percent_Identity=32.1243523316062, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367345, Length=150, Percent_Identity=35.3333333333333, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790326, Length=162, Percent_Identity=35.1851851851852, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789370, Length=204, Percent_Identity=30.8823529411765, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI2367245, Length=155, Percent_Identity=34.8387096774194, Blast_Score=87, Evalue=6e-19,
Organism=Escherichia coli, GI226510944, Length=140, Percent_Identity=35.7142857142857, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI87082179, Length=147, Percent_Identity=36.0544217687075, Blast_Score=80, Evalue=7e-17,
Organism=Escherichia coli, GI1788811, Length=138, Percent_Identity=36.9565217391304, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1789067, Length=169, Percent_Identity=31.9526627218935, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082180, Length=144, Percent_Identity=35.4166666666667, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI1787740, Length=102, Percent_Identity=38.2352941176471, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787478, Length=123, Percent_Identity=34.9593495934959, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87082114, Length=178, Percent_Identity=28.6516853932584, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789079, Length=102, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 20104; Mature: 19973

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
11.5 %Cys+Met (Translated Protein)
8.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
11.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLGFYYDMTACIGCKTCQVACKDKNNLEVGVLFRRVYTVEGGKFPHPWFYHISLGCNH
CCCCCCEEHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCC
CAQAPCVRNCPTGALYKREDGIVMQDRNKCIGCRYCVWSCPYGAPQYIASEGKVGKCNLC
HHCCCCCCCCCCCCEEECCCCEEEECCCCEEEEEEEEEECCCCCHHHHHCCCCCCCHHHH
ADLIDRGEQPACVAACMMRALDFGDIEELRRKYGGTADVKGLPDASITHPSITIQPADEA
HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHC
RK
CC
>Mature Secondary Structure 
AQLGFYYDMTACIGCKTCQVACKDKNNLEVGVLFRRVYTVEGGKFPHPWFYHISLGCNH
CCCCCEEHHHHHHCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCC
CAQAPCVRNCPTGALYKREDGIVMQDRNKCIGCRYCVWSCPYGAPQYIASEGKVGKCNLC
HHCCCCCCCCCCCCEEECCCCEEEECCCCEEEEEEEEEECCCCCHHHHHCCCCCCCHHHH
ADLIDRGEQPACVAACMMRALDFGDIEELRRKYGGTADVKGLPDASITHPSITIQPADEA
HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCHHC
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]