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The map label for this gene is rimP

Identifier: 83595107

GI number: 83595107

Start: 4326714

End: 4327391

Strand: Direct

Name: rimP

Synonym: Rru_A3778

Alternate gene names: 83595107

Gene position: 4326714-4327391 (Clockwise)

Preceding gene: 83595106

Following gene: 83595108

Centisome position: 99.4

GC content: 64.6

Gene sequence:

>678_bases
ATGGCCTTGTGGGGCTGGCGGGGGGTGGGCCGTCGGCCCACCTTTTTTGTTTTCGCCTCCCTTGCTCCAATCGGCCGTGA
CTTTTTACGGCGGAACGGAGACGACGCGCGCATGATGGGCCATCTGGAAAAGCTGCTTGCCCCGACCCTTGACGCCATGG
GCTACGAGGTGGTGCGAGTGACTTTGCTGGGCAGTCAGAACCCCACCTTGCAGGTCATGGCCGAACGGCTTGATGGTGTG
GCGATGACCGTATCGGATTGCGAGACGATCAGCCGGGCCCTTGGCGCCCTGCTTGATGTCGAGGATCCGATCGCCGGCCG
GTACAGTCTGGAGATCAGTTCGCCCGGAATCGACCGGCCGCTGACCCGGCCCAAGGATTACGCGCGCTTCGCCGGCCACG
AGGCCCGCATCGAGACCGATCGTCTGATCGAAGGGCATCGGCGGATGAAGGGACTTTTGCTGGGGATCGACGAGGATCGC
ACGGTTCGCCTGCGCCTCATCGAAGGCAAGGCGGCCGAGGATGGCACCCTGCCCGAGGTGGAGATCCCCTTTGGCGCCAT
CGTCAAGGCCAAGTTGCTGCTGACGGACGCTCTGATCGCCAAGGCTCTCAAGGACGCCGAAGCTTTGGCCGATGAGGGAG
AGGCCGCCGGTGGCGCGGTCGAGGGCGGCGTAGCCTGA

Upstream 100 bases:

>100_bases
CCCCGGGACCCTCGCCGAAGCCCCGGCCGGGGAAGGCGCCGATAACAATCCTTGAGATTGGTCGAAACTGGCCTTATAAA
GACCGTGACATCTTCTTGAC

Downstream 100 bases:

>100_bases
CCAACGGCCCGCCCGCCGACCGAACAATCAGGTCGAACAACCAGGATAGCGAAACGATGGAACGAACCGTTGGCATGAGC
CGGCCCGAACTAGTCCAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MALWGWRGVGRRPTFFVFASLAPIGRDFLRRNGDDARMMGHLEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGV
AMTVSDCETISRALGALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDR
TVRLRLIEGKAAEDGTLPEVEIPFGAIVKAKLLLTDALIAKALKDAEALADEGEAAGGAVEGGVA

Sequences:

>Translated_225_residues
MALWGWRGVGRRPTFFVFASLAPIGRDFLRRNGDDARMMGHLEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGV
AMTVSDCETISRALGALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDR
TVRLRLIEGKAAEDGTLPEVEIPFGAIVKAKLLLTDALIAKALKDAEALADEGEAAGGAVEGGVA
>Mature_224_residues
ALWGWRGVGRRPTFFVFASLAPIGRDFLRRNGDDARMMGHLEKLLAPTLDAMGYEVVRVTLLGSQNPTLQVMAERLDGVA
MTVSDCETISRALGALLDVEDPIAGRYSLEISSPGIDRPLTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDRT
VRLRLIEGKAAEDGTLPEVEIPFGAIVKAKLLLTDALIAKALKDAEALADEGEAAGGAVEGGVA

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=116, Percent_Identity=35.3448275862069, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_RHORT (Q2RMS3)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428859.1
- ProteinModelPortal:   Q2RMS3
- SMR:   Q2RMS3
- STRING:   Q2RMS3
- GeneID:   3837235
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3778
- NMPDR:   fig|1085.1.peg.1137
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   TVQIMAD
- PhylomeDB:   Q2RMS3
- BioCyc:   RRUB269796:RRU_A3778-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 24346; Mature: 24215

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALWGWRGVGRRPTFFVFASLAPIGRDFLRRNGDDARMMGHLEKLLAPTLDAMGYEVVRV
CCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
TLLGSQNPTLQVMAERLDGVAMTVSDCETISRALGALLDVEDPIAGRYSLEISSPGIDRP
EEECCCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
LTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDRTVRLRLIEGKAAEDGTLPEV
CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCCCCEEEEEEEECCCCCCCCCCEE
EIPFGAIVKAKLLLTDALIAKALKDAEALADEGEAAGGAVEGGVA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALWGWRGVGRRPTFFVFASLAPIGRDFLRRNGDDARMMGHLEKLLAPTLDAMGYEVVRV
CCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEE
TLLGSQNPTLQVMAERLDGVAMTVSDCETISRALGALLDVEDPIAGRYSLEISSPGIDRP
EEECCCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCC
LTRPKDYARFAGHEARIETDRLIEGHRRMKGLLLGIDEDRTVRLRLIEGKAAEDGTLPEV
CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEECCCCCEEEEEEEECCCCCCCCCCEE
EIPFGAIVKAKLLLTDALIAKALKDAEALADEGEAAGGAVEGGVA
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA