Click here to switch to the map view.

The map label for this gene is ycaR [C]

Identifier: 83595038

GI number: 83595038

Start: 4260135

End: 4260329

Strand: Reverse

Name: ycaR [C]

Synonym: Rru_A3709

Alternate gene names: 83595038

Gene position: 4260329-4260135 (Counterclockwise)

Preceding gene: 83595039

Following gene: 83595037

Centisome position: 97.88

GC content: 64.1

Gene sequence:

>195_bases
ATGACCACCACCCGCCCGACCGACCCCAAGCTGCTGGAGCTTCTGGTGGCTCCGGGATCGCAAAATCCCCTGCGCTACGA
TGCCCAAGCCCAGGAACTGATCGATGATATCGCCGGTCTGGCCTTCCCGATCCGCGACGGCATTCCCATCATGCTGATCG
ACGAGGCCCGCCGCTTCGACGACGCCAAGGGCTGA

Upstream 100 bases:

>100_bases
CGCATCGGCGCGGCTTCCTCTTTAATGGGCGGCACAACCCAGTAGAATGGCCCGCCCCGCTTTCCCCACTCCCCGCGTTC
TCGCCAAAGGATCGATGCCG

Downstream 100 bases:

>100_bases
GCTCTCCGCCCTGTCGGGATCATCGCCGCCCTGGTCCTGGGCGATTACGCCGCGCGGCCAAGCGTCGATGATCTCCAGGA
CGGCGGCCTCCACACCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 63

Protein sequence:

>64_residues
MTTTRPTDPKLLELLVAPGSQNPLRYDAQAQELIDDIAGLAFPIRDGIPIMLIDEARRFDDAKG

Sequences:

>Translated_64_residues
MTTTRPTDPKLLELLVAPGSQNPLRYDAQAQELIDDIAGLAFPIRDGIPIMLIDEARRFDDAKG
>Mature_63_residues
TTTRPTDPKLLELLVAPGSQNPLRYDAQAQELIDDIAGLAFPIRDGIPIMLIDEARRFDDAKG

Specific function: Unknown

COG id: COG2835

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0434 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005651 [H]

Pfam domain/function: PF03966 Trm112p [H]

EC number: NA

Molecular weight: Translated: 7065; Mature: 6934

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTRPTDPKLLELLVAPGSQNPLRYDAQAQELIDDIAGLAFPIRDGIPIMLIDEARRFD
CCCCCCCCHHHHHHEECCCCCCCEEECCHHHHHHHHHHHCEECCCCCCCEEEECCCCCCC
DAKG
CCCC
>Mature Secondary Structure 
TTTRPTDPKLLELLVAPGSQNPLRYDAQAQELIDDIAGLAFPIRDGIPIMLIDEARRFD
CCCCCCCHHHHHHEECCCCCCCEEECCHHHHHHHHHHHCEECCCCCCCEEEECCCCCCC
DAKG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA