Click here to switch to the map view.

The map label for this gene is pheT

Identifier: 83594853

GI number: 83594853

Start: 4055308

End: 4057710

Strand: Direct

Name: pheT

Synonym: Rru_A3524

Alternate gene names: 83594853

Gene position: 4055308-4057710 (Clockwise)

Preceding gene: 83594852

Following gene: 83594859

Centisome position: 93.16

GC content: 70.04

Gene sequence:

>2403_bases
ATGAAGTTCACCATCGGCTGGCTCAAGGACCACCTCGACACCCAGGCCAGCGTGGCCGATATCGCCGAAAAGCTGACGGC
GCTCGGCCTGGAGGTCGACGCCATCGAAGACCCGACAGCGGCGCTGGCGCCCTTTGTCGTCGGCCATGTCATCGAAGCCG
GCCCCCATCCCGATGCCGACCGGCTGAAGCTCTGCCGGGTCGATAGCGGGACGGATATTTTGCAGATCGTCTGCGGCGCC
CCCAACGCCCGCACCGGCCTGAAGGTGGCCCTGGCCCTGCCCGGCGCCGTCATCCCGGCCACCGGCGATGTGCTGAAGAA
GGGCAAGATCCGCGGCATCGAAAGCCAGGGCATGATGTGCTCGACCCGCGAATTGGGCCTGGGCGAGGATCACGACGGCA
TCATCGAACTGCCCGCCGACACCCCCGTCGGCGTGCCGCTGGTCGATGTGCTGGCCCTTGATCCGGTGATCGACATCGCC
ATCACCCCCAACCGCGCCGACGCCCTGGGCGTGCGCGGCATCGCCCGCGATCTGGCCGCCGGCGGCCTGGGCGGGGTGAT
CGCCGACACGCTCACGGCGATCCCCGGCCGCTTCCCCAGCCCGATCGGCGTGGCGATCGACCCGGAAACTCTGGCCAGCG
GCGCCTGTAGCCACTATGTCGGGCGGTACTTCCGGGGCGTGCGCAACGGCGAAAGCCCGGCTTGGCTCAAGGACCGGCTG
AACGCCATCGGCGTGCGGCCGATCAGCCTGCTGGTCGATATCACCAATTACGTCACCTTCGACCGCGCCCGGCCGCTGCA
TGTCTTCGATGCCGACAAGCTGACCGGTACGACGATCACCGCCCGGCCGGCGCGCCAGGGCGAAATCCTGCGCGCCCTTG
ATGGCCGCAGCTACACGCTTGACGCCCCGGTGGTCGCCATCGCCGATGGCGCCGGTCCCCAGGGGTTGGGCGGCATCATG
GGCGGCGAGGACACGGGCGTTGACGAAAACACCGTCAATGTTTTCCTGGAATCCGCCCTGTTCGATCCGGCCAATACCGC
CGCCGCCGGGCGCTTCCTCGGCATCGACTCCGACGCCCGCTATCGGTTCGAGCGCGGCGTCGATCCCGAAAGCTGCCTGC
TGGGCGCCGAGTTGGCGACGCGGATGATCCTTGATCTGTGCGGCGGCGAGGCTAGCGAGCTGGTGATCGCCGGCGCCCCG
CCGGTTTGGCGGCGCACCATCGCCCTGCGTCCGGCCCGCGTCGCCCGCCTGGGCGGCGTCGCCGTCGAGCGCGCCGAGAT
GGTGGCGAAACTGCGCGCCCTGGGCTGCACGGTCGAAGACGACGGCGCCGAGGCCCTGCGGGTCGACCCGCCGTCGTGGC
GGGTCGATATCGGCGCCGAACATGATCTGATCGAGGAAGTCGTGCGCCTGCACGGCTTCGATCTGGTCCCGGCCGTGCCG
TTGCCCCGCGATCCGATGCCCAAGGCCGTGCTCACCCCCGGCCAACGGCGGATGATCACCGTGAAGCGCACCCTGGCGAC
GCGCGGCATGCTTGAAGCGGTGACCTGGTCGTTCCTGCCGCGCGCCGTGGCCAAAGGCTTTGGCGGTGGCCAGGACGCCT
TGGTGCTGGCCAATCCGATCAGCAGCGATCTCGACGCCATGCGGCCGTCGATCCTGCCCAATCTGATTGCCGCCGCCGGC
CGCAACGCCGCGCGCGGCTATGGCGACCTCGGGCTGTTCGAGGTTGGTCCGCGCTTCCATGGCGGCGAGCCCGGCCAGCA
GACCCTGGTGGCCGCCGGCCTGCGCGCCGGCAAGATCGCCCCCCGCCATTGGTCGCGGCCGGCGCGCGATGCCGATCTGT
ATGACATCAAGGCCGATGTGCTGGCCGCGATCGAGGCCGCCGGCGCGCCGACGGCTTCGCTTCAAGTCAGCGCCGACGCC
CCGGCGTGGTTCCATCCCGGACGGTCGGGGCAGATCCGCCTGGGCCGCACCGTGCTCGCGGCCTTCGGCGAGATCCATCC
GGCGGCCTTGGCCCTGCTCGACGTCAAGGGGCCGATGGTCGGCTTCGAGCTTGATCTTGATGCCCTGCCCTTGCCCAAGG
GCCGGCCGAGCAAGACCCGGCCGCCGCTGACGCTGTCGCCCTTCCAGCCCGTCGCCCGCGACTTCGCCTTCGTCGTCGAG
GCCGGGGTCGCCGGTGACGCGGTGATCAAGGCGGCGCGCGGCGCCGATAAGGCCTTGATCACCGACGTGGTGATCTTCGA
CGTCTACCAAGGCGATCGCCTGGAAGCCGGGCGCAAATCCCTGGCCCTGTCGGTCACCTTGCAGCCCACCGACCATACCC
TGTCGGACGAGGAGATCGAGGCGGTCTCGGCGCGCATCGTCGGCGCCGTCACCAAGCTGACCGGCGGCAGCCTGCGCAGC
TAA

Upstream 100 bases:

>100_bases
TCCCCGATCTGCGGACCTTCTTCGAGTCCGATCTGCGCTGGCTGCGCCATTACGGCTTCGCCGCGCTTGATCTTCCCACC
CTGCACGGAGGGCTGTCGCG

Downstream 100 bases:

>100_bases
AACCAAGGAAGCACCCGGATCGGAGAGGCCCTTAGAGGGGTGTGGGTGACCTATGTCGCTCACACCCCTCTTGGATTTTC
ACAGGGGAGCAAATCCCGAA

Product: phenylalanyl-tRNA synthetase subunit beta

Products: NA

Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS

Number of amino acids: Translated: 800; Mature: 800

Protein sequence:

>800_residues
MKFTIGWLKDHLDTQASVADIAEKLTALGLEVDAIEDPTAALAPFVVGHVIEAGPHPDADRLKLCRVDSGTDILQIVCGA
PNARTGLKVALALPGAVIPATGDVLKKGKIRGIESQGMMCSTRELGLGEDHDGIIELPADTPVGVPLVDVLALDPVIDIA
ITPNRADALGVRGIARDLAAGGLGGVIADTLTAIPGRFPSPIGVAIDPETLASGACSHYVGRYFRGVRNGESPAWLKDRL
NAIGVRPISLLVDITNYVTFDRARPLHVFDADKLTGTTITARPARQGEILRALDGRSYTLDAPVVAIADGAGPQGLGGIM
GGEDTGVDENTVNVFLESALFDPANTAAAGRFLGIDSDARYRFERGVDPESCLLGAELATRMILDLCGGEASELVIAGAP
PVWRRTIALRPARVARLGGVAVERAEMVAKLRALGCTVEDDGAEALRVDPPSWRVDIGAEHDLIEEVVRLHGFDLVPAVP
LPRDPMPKAVLTPGQRRMITVKRTLATRGMLEAVTWSFLPRAVAKGFGGGQDALVLANPISSDLDAMRPSILPNLIAAAG
RNAARGYGDLGLFEVGPRFHGGEPGQQTLVAAGLRAGKIAPRHWSRPARDADLYDIKADVLAAIEAAGAPTASLQVSADA
PAWFHPGRSGQIRLGRTVLAAFGEIHPAALALLDVKGPMVGFELDLDALPLPKGRPSKTRPPLTLSPFQPVARDFAFVVE
AGVAGDAVIKAARGADKALITDVVIFDVYQGDRLEAGRKSLALSVTLQPTDHTLSDEEIEAVSARIVGAVTKLTGGSLRS

Sequences:

>Translated_800_residues
MKFTIGWLKDHLDTQASVADIAEKLTALGLEVDAIEDPTAALAPFVVGHVIEAGPHPDADRLKLCRVDSGTDILQIVCGA
PNARTGLKVALALPGAVIPATGDVLKKGKIRGIESQGMMCSTRELGLGEDHDGIIELPADTPVGVPLVDVLALDPVIDIA
ITPNRADALGVRGIARDLAAGGLGGVIADTLTAIPGRFPSPIGVAIDPETLASGACSHYVGRYFRGVRNGESPAWLKDRL
NAIGVRPISLLVDITNYVTFDRARPLHVFDADKLTGTTITARPARQGEILRALDGRSYTLDAPVVAIADGAGPQGLGGIM
GGEDTGVDENTVNVFLESALFDPANTAAAGRFLGIDSDARYRFERGVDPESCLLGAELATRMILDLCGGEASELVIAGAP
PVWRRTIALRPARVARLGGVAVERAEMVAKLRALGCTVEDDGAEALRVDPPSWRVDIGAEHDLIEEVVRLHGFDLVPAVP
LPRDPMPKAVLTPGQRRMITVKRTLATRGMLEAVTWSFLPRAVAKGFGGGQDALVLANPISSDLDAMRPSILPNLIAAAG
RNAARGYGDLGLFEVGPRFHGGEPGQQTLVAAGLRAGKIAPRHWSRPARDADLYDIKADVLAAIEAAGAPTASLQVSADA
PAWFHPGRSGQIRLGRTVLAAFGEIHPAALALLDVKGPMVGFELDLDALPLPKGRPSKTRPPLTLSPFQPVARDFAFVVE
AGVAGDAVIKAARGADKALITDVVIFDVYQGDRLEAGRKSLALSVTLQPTDHTLSDEEIEAVSARIVGAVTKLTGGSLRS
>Mature_800_residues
MKFTIGWLKDHLDTQASVADIAEKLTALGLEVDAIEDPTAALAPFVVGHVIEAGPHPDADRLKLCRVDSGTDILQIVCGA
PNARTGLKVALALPGAVIPATGDVLKKGKIRGIESQGMMCSTRELGLGEDHDGIIELPADTPVGVPLVDVLALDPVIDIA
ITPNRADALGVRGIARDLAAGGLGGVIADTLTAIPGRFPSPIGVAIDPETLASGACSHYVGRYFRGVRNGESPAWLKDRL
NAIGVRPISLLVDITNYVTFDRARPLHVFDADKLTGTTITARPARQGEILRALDGRSYTLDAPVVAIADGAGPQGLGGIM
GGEDTGVDENTVNVFLESALFDPANTAAAGRFLGIDSDARYRFERGVDPESCLLGAELATRMILDLCGGEASELVIAGAP
PVWRRTIALRPARVARLGGVAVERAEMVAKLRALGCTVEDDGAEALRVDPPSWRVDIGAEHDLIEEVVRLHGFDLVPAVP
LPRDPMPKAVLTPGQRRMITVKRTLATRGMLEAVTWSFLPRAVAKGFGGGQDALVLANPISSDLDAMRPSILPNLIAAAG
RNAARGYGDLGLFEVGPRFHGGEPGQQTLVAAGLRAGKIAPRHWSRPARDADLYDIKADVLAAIEAAGAPTASLQVSADA
PAWFHPGRSGQIRLGRTVLAAFGEIHPAALALLDVKGPMVGFELDLDALPLPKGRPSKTRPPLTLSPFQPVARDFAFVVE
AGVAGDAVIKAARGADKALITDVVIFDVYQGDRLEAGRKSLALSVTLQPTDHTLSDEEIEAVSARIVGAVTKLTGGSLRS

Specific function: Unknown

COG id: COG0072

COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 tRNA-binding domain

Homologues:

Organism=Escherichia coli, GI1788006, Length=823, Percent_Identity=37.1810449574727, Blast_Score=468, Evalue=1e-133,

Paralogues:

None

Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SYFB_RHORT (Q2RNH7)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428605.1
- ProteinModelPortal:   Q2RNH7
- SMR:   Q2RNH7
- STRING:   Q2RNH7
- GeneID:   3836978
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3524
- NMPDR:   fig|1085.1.peg.1974
- eggNOG:   COG0072
- HOGENOM:   HBG399638
- OMA:   ADKLRVC
- PhylomeDB:   Q2RNH7
- ProtClustDB:   PRK00629
- BioCyc:   RRUB269796:RRU_A3524-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00283
- InterPro:   IPR005146
- InterPro:   IPR005147
- InterPro:   IPR009061
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004532
- InterPro:   IPR020825
- InterPro:   IPR005121
- InterPro:   IPR002547
- Gene3D:   G3DSA:3.50.40.10
- Gene3D:   G3DSA:3.30.56.20
- Gene3D:   G3DSA:3.30.70.380
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00873
- SMART:   SM00874
- SMART:   SM00896
- TIGRFAMs:   TIGR00472

Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind; SSF56037 B3_4; SSF54991 Fdx_AntiC_bd; SSF50249 Nucleic_acid_OB; SSF46955 Putativ_DNA_bind

EC number: =6.1.1.20

Molecular weight: Translated: 83910; Mature: 83910

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS51483 B5; PS51447 FDX_ACB; PS50886 TRBD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFTIGWLKDHLDTQASVADIAEKLTALGLEVDAIEDPTAALAPFVVGHVIEAGPHPDAD
CEEEHHHHHHHHCCHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
RLKLCRVDSGTDILQIVCGAPNARTGLKVALALPGAVIPATGDVLKKGKIRGIESQGMMC
CEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCEEECCCHHHHHCCCCCCCCCCCCEE
STRELGLGEDHDGIIELPADTPVGVPLVDVLALDPVIDIAITPNRADALGVRGIARDLAA
ECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHC
GGLGGVIADTLTAIPGRFPSPIGVAIDPETLASGACSHYVGRYFRGVRNGESPAWLKDRL
CCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
NAIGVRPISLLVDITNYVTFDRARPLHVFDADKLTGTTITARPARQGEILRALDGRSYTL
HHCCCCHHHHEEEHHHHEEECCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHCCCEEEE
DAPVVAIADGAGPQGLGGIMGGEDTGVDENTVNVFLESALFDPANTAAAGRFLGIDSDAR
CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCH
YRFERGVDPESCLLGAELATRMILDLCGGEASELVIAGAPPVWRRTIALRPARVARLGGV
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHEECCCHHHHHHCCH
AVERAEMVAKLRALGCTVEDDGAEALRVDPPSWRVDIGAEHDLIEEVVRLHGFDLVPAVP
HHHHHHHHHHHHHHCCCEECCCCCEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCC
LPRDPMPKAVLTPGQRRMITVKRTLATRGMLEAVTWSFLPRAVAKGFGGGQDALVLANPI
CCCCCCCCHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
SSDLDAMRPSILPNLIAAAGRNAARGYGDLGLFEVGPRFHGGEPGQQTLVAAGLRAGKIA
CHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCC
PRHWSRPARDADLYDIKADVLAAIEAAGAPTASLQVSADAPAWFHPGRSGQIRLGRTVLA
CHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCCCEEEHHHHHH
AFGEIHPAALALLDVKGPMVGFELDLDALPLPKGRPSKTRPPLTLSPFQPVARDFAFVVE
HHCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH
AGVAGDAVIKAARGADKALITDVVIFDVYQGDRLEAGRKSLALSVTLQPTDHTLSDEEIE
CCCCCHHHHHHHCCCCHHHHEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH
AVSARIVGAVTKLTGGSLRS
HHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKFTIGWLKDHLDTQASVADIAEKLTALGLEVDAIEDPTAALAPFVVGHVIEAGPHPDAD
CEEEHHHHHHHHCCHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCC
RLKLCRVDSGTDILQIVCGAPNARTGLKVALALPGAVIPATGDVLKKGKIRGIESQGMMC
CEEEEEECCCCCEEEEEECCCCCCCCCEEEEECCCEEECCCHHHHHCCCCCCCCCCCCEE
STRELGLGEDHDGIIELPADTPVGVPLVDVLALDPVIDIAITPNRADALGVRGIARDLAA
ECCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHC
GGLGGVIADTLTAIPGRFPSPIGVAIDPETLASGACSHYVGRYFRGVRNGESPAWLKDRL
CCCCHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
NAIGVRPISLLVDITNYVTFDRARPLHVFDADKLTGTTITARPARQGEILRALDGRSYTL
HHCCCCHHHHEEEHHHHEEECCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHCCCEEEE
DAPVVAIADGAGPQGLGGIMGGEDTGVDENTVNVFLESALFDPANTAAAGRFLGIDSDAR
CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCH
YRFERGVDPESCLLGAELATRMILDLCGGEASELVIAGAPPVWRRTIALRPARVARLGGV
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHEECCCHHHHHHCCH
AVERAEMVAKLRALGCTVEDDGAEALRVDPPSWRVDIGAEHDLIEEVVRLHGFDLVPAVP
HHHHHHHHHHHHHHCCCEECCCCCEEEECCCCEEEECCCCHHHHHHHHHHCCCCCCCCCC
LPRDPMPKAVLTPGQRRMITVKRTLATRGMLEAVTWSFLPRAVAKGFGGGQDALVLANPI
CCCCCCCCHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
SSDLDAMRPSILPNLIAAAGRNAARGYGDLGLFEVGPRFHGGEPGQQTLVAAGLRAGKIA
CHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCC
PRHWSRPARDADLYDIKADVLAAIEAAGAPTASLQVSADAPAWFHPGRSGQIRLGRTVLA
CHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEECCCCCCCEEEHHHHHH
AFGEIHPAALALLDVKGPMVGFELDLDALPLPKGRPSKTRPPLTLSPFQPVARDFAFVVE
HHCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHH
AGVAGDAVIKAARGADKALITDVVIFDVYQGDRLEAGRKSLALSVTLQPTDHTLSDEEIE
CCCCCHHHHHHHCCCCHHHHEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH
AVSARIVGAVTKLTGGSLRS
HHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA