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The map label for this gene is pal [H]

Identifier: 83594657

GI number: 83594657

Start: 3839556

End: 3840377

Strand: Reverse

Name: pal [H]

Synonym: Rru_A3328

Alternate gene names: 83594657

Gene position: 3840377-3839556 (Counterclockwise)

Preceding gene: 83594659

Following gene: 83594655

Centisome position: 88.23

GC content: 65.82

Gene sequence:

>822_bases
ATGATGCATAAGGTGCTGATCAGCGTTGCCGCCGCCGGGCTACTTACTGCCTGCGCCGACGTATGGAACTACGAGGAAGT
GGCTACGCAGAGCAATGCGGGCACCGCCTTCGACGCCGCGCTCCAGAAAGATTACGTCGCTCTGGCCGCTCACGAAGCGA
ACTATGGCGATTGGGACGATACCGCCTATTACACCAACAAGGCGAAGCTGGCCGCCGCCGGCCAGACCCCTGCCCCCACG
GCGATGGCCGAGCGTGAGCTGGGCTCTTACACCGGCGAGCTGACCGCCGCCCGTTCGGCCCTGGTGACCGCCCTGGGCGC
CGGCGCCCCGTCGTCCAATCCGACCGTCGCCGCCAAGGCGCAGACCAGCTTTGATTGCTGGGCCGAGGAAGCCGAAGAGG
ATCGCCAGCCCGAGCATATCCGCGAGTGCAAGCAGAACTTCGAGATCGCCATGAACGCCCTTGGCGGCGCTCCGGCCCCG
GCCGTGGTTTCCGAAGGCTTCAAGGTGTTCTTCGCCCTTGATAGCGCCCGCCTGTCGCCCGAATCCGAGGCCACCCTTGA
TCGCGTGTCGCAGGCCTTCTTGTCCGGCTCGCCCGCGTCCGTGATGGTCGTTGGCTATGCCGACACCTCGGGCCCGGCCG
ACTATAACATCTTGTTGTCGCAGCGTCGCGCCGAAGCCGTCGCCCGCGGTCTGGCCCAGCGCGGTATCGCTTCCGAGGTT
CTGACCCTCGAGGCTTACGGCGAAGAGCGTTTGGCCGTCCCCACCGCCGATGGTGTGGTCGAGCAGCAGAACCGTCGTGT
CGAAGTGGTCTTCGGCGGCTAA

Upstream 100 bases:

>100_bases
GAGTTGGAAGTGCGGACTTAATTACCAAGACATTCGTCGGGATTGCCGCAGTTTCCCAGAATTTAAACCGCCAACAGTGG
TGATGGAGGAGTTTTGAATC

Downstream 100 bases:

>100_bases
GGCTCCGCGTTTTCCTTCACCGGTGGTTTATGAATCAGCGGCGCGTCTCCCCCAAAGGAGGCGCGCCGTTTTCAATTCGA
GCAAATTCCGAGCCCCCTGG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MMHKVLISVAAAGLLTACADVWNYEEVATQSNAGTAFDAALQKDYVALAAHEANYGDWDDTAYYTNKAKLAAAGQTPAPT
AMAERELGSYTGELTAARSALVTALGAGAPSSNPTVAAKAQTSFDCWAEEAEEDRQPEHIRECKQNFEIAMNALGGAPAP
AVVSEGFKVFFALDSARLSPESEATLDRVSQAFLSGSPASVMVVGYADTSGPADYNILLSQRRAEAVARGLAQRGIASEV
LTLEAYGEERLAVPTADGVVEQQNRRVEVVFGG

Sequences:

>Translated_273_residues
MMHKVLISVAAAGLLTACADVWNYEEVATQSNAGTAFDAALQKDYVALAAHEANYGDWDDTAYYTNKAKLAAAGQTPAPT
AMAERELGSYTGELTAARSALVTALGAGAPSSNPTVAAKAQTSFDCWAEEAEEDRQPEHIRECKQNFEIAMNALGGAPAP
AVVSEGFKVFFALDSARLSPESEATLDRVSQAFLSGSPASVMVVGYADTSGPADYNILLSQRRAEAVARGLAQRGIASEV
LTLEAYGEERLAVPTADGVVEQQNRRVEVVFGG
>Mature_273_residues
MMHKVLISVAAAGLLTACADVWNYEEVATQSNAGTAFDAALQKDYVALAAHEANYGDWDDTAYYTNKAKLAAAGQTPAPT
AMAERELGSYTGELTAARSALVTALGAGAPSSNPTVAAKAQTSFDCWAEEAEEDRQPEHIRECKQNFEIAMNALGGAPAP
AVVSEGFKVFFALDSARLSPESEATLDRVSQAFLSGSPASVMVVGYADTSGPADYNILLSQRRAEAVARGLAQRGIASEV
LTLEAYGEERLAVPTADGVVEQQNRRVEVVFGG

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 28714; Mature: 28714

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHKVLISVAAAGLLTACADVWNYEEVATQSNAGTAFDAALQKDYVALAAHEANYGDWDD
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHEEEEEECCCCCCCCC
TAYYTNKAKLAAAGQTPAPTAMAERELGSYTGELTAARSALVTALGAGAPSSNPTVAAKA
CEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
QTSFDCWAEEAEEDRQPEHIRECKQNFEIAMNALGGAPAPAVVSEGFKVFFALDSARLSP
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCC
ESEATLDRVSQAFLSGSPASVMVVGYADTSGPADYNILLSQRRAEAVARGLAQRGIASEV
CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
LTLEAYGEERLAVPTADGVVEQQNRRVEVVFGG
EEEEECCCCEEECCCCCCHHHCCCCEEEEEECC
>Mature Secondary Structure
MMHKVLISVAAAGLLTACADVWNYEEVATQSNAGTAFDAALQKDYVALAAHEANYGDWDD
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHEEEEEECCCCCCCCC
TAYYTNKAKLAAAGQTPAPTAMAERELGSYTGELTAARSALVTALGAGAPSSNPTVAAKA
CEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
QTSFDCWAEEAEEDRQPEHIRECKQNFEIAMNALGGAPAPAVVSEGFKVFFALDSARLSP
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCCCC
ESEATLDRVSQAFLSGSPASVMVVGYADTSGPADYNILLSQRRAEAVARGLAQRGIASEV
CHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
LTLEAYGEERLAVPTADGVVEQQNRRVEVVFGG
EEEEECCCCEEECCCCCCHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]