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The map label for this gene is yddA [C]

Identifier: 83594630

GI number: 83594630

Start: 3797539

End: 3799428

Strand: Direct

Name: yddA [C]

Synonym: Rru_A3300

Alternate gene names: 83594630

Gene position: 3797539-3799428 (Clockwise)

Preceding gene: 83594628

Following gene: 83594631

Centisome position: 87.24

GC content: 65.45

Gene sequence:

>1890_bases
ATGGCGATACCCGACCCCTCCCCGCGTCCTTCCCCGGAACCCGTGAAAGCCGATACCGACGCCCTCTGGCCGCAAGTGCG
CAGCATGGCGCGGGCCTTCTGGAAAAGCCCGGCGCGCAACCGCCTGATTTTTCTGGGCGGTGGTCTGGCCACGGTGATCG
CTCTCACCGCCTTTGGCCAGATGTGGCTGAACGCCTGGAACCAGCCGTTTTATGATTCGCTGGCGCGCAAGGATATGGAT
GGCTTCATCCACCAGCTTTGGGTTTTCGCCGGCATCGCCTTTCTTCTTCTCACCCTCAATGTCAGCCAGACCTGGCTCAA
CCAGTCGACCAAGGTGAAGCTGCGCGAGGGGCTGGTCCGCGACCTGCTTGATGACTGGCTGCAAGGACGGCGGGCCTTCC
GTCTGGCCTTCAACAGCGAAATCGGCGTCAACCCCGACCAGCGCATCCACGAGGACGCCCGCCATCTTTCCGAACTGACC
ACCGATCTTGGCATCGGCCTGTTACAGGCCTCCTTGCTGCTCGCCACCTTCATCGGCGTGCTGTGGGGGCTGTCGCGGGG
CATCGTCTTGCATATCGACGGGCAGGTCCTGGCCATTCCCGGTTATATGGTGTGGTGCGCCCTGCTTTACGCTGGCATCG
CCTCGCTGCTCAGTTGGAAGGTCGGCAGCCCGCTGGTCCGGCTAAATGCATTGCGCTATGCCCGCGAAGCCGATCTGCGC
TTCAATTTGGTCCGGGTCAGCGAACATATGGAGGGCATCGCCCTCCACGGCGGCGAGGCCGATGAACGCGACCGTCTGTC
GAGCGATCTCGACCGCGTTCTGGGCATCATGCGCCGCATCGTCGGCGCGGTGACCGGCCTGACCTGGATCACCGCCGGCT
ATGGCTGGTTCACCCTGGTGGCGCCGATCCTGGTCGCCGCGCCGGGCTATTTCCACGGCAATCTCAGCTTCGGCGAATTG
ATGATGGCGGTCGGCGCCTTCATCCAGGTCCAGCAGGCCCTACGCTGGTTCATCGACAACGTCAGCGCCATCGCCGACTG
GCGGGCGACCCTTTTGCGGGTATCGAGCTTCCGCGAGGGGCTTCAGGCGATGGATCGCCTGGGCGAGGGGAGGGGTCGCA
TCGATTTCGCGCCGTCCACCGACAGGCAGGTCATCCTCTCGGGTCTGGAAGTCGCCTCGCCAGCCGGAGCGATCTCGCTC
AGCCAGCCCGAGGTGGTGATCGAGCCCGGCCAACACCTGTTGATCATCGGCGATTCGGGCACCGGCAAAACCGTGTTCTT
CCGGGCCATCGCCGGGCTGTGGCCCTGGGGCAAGGGCCGCATCGGCCTGCCGCCGGACGACGACTTGCAAGACCGCGAGG
GCGATGGCGTGATGTTCCTGCCCCGCCACCCCTACATCCCGCCCGGCACCCTGCGCGCGGCGATCTCCTATCCCCAGGCC
GCCGATGATTTCGACGATTGGGCCCTGGTCGAAGCGCTGGGCAGCATGGGCTTGGCCCATCTCGCCGCCCGCCTCAACCG
CTCGGCGCGCTGGGACAAGGAACTGACCGACGATGAGCGCCGCTGCCTCGCCTTCGCCCGGGTCGCCCTGCGCAAGCCCA
AGGTGGTGATCATGGACGAGGCCTTCGACGTGCTCGACGACGCCTCGCTTGGCCGGGCGATGGCGATTTTCCGCGAAAAG
CTGCGCAAGACCATCGTTATCACCATCGGCCGCCCCGAGGTCCGCGATCATTTCTTCGATCAGGTCCTGCGGCTGTCGCT
TGATCCCGCCGGCCCCCGTTTCCTTCCCGACGACCACGCCACCGGCGATGCCGATCGCGACGCGCCGACGGCCGGAGACG
ACGAGGAAGGCCTTTCCGTTCGTGCTGTTCCCAAGGAGAGCTCGCTATGA

Upstream 100 bases:

>100_bases
AAGACACGTCAAAGACACGTCCCGACCGGCTCCTCCTGGGTCCCCCGACCATCCAGGCTCCCGCGCTCCAGGACCTCGGC
CTTCAGGATTCCACACCTTC

Downstream 100 bases:

>100_bases
CCCTATCGCCCCCTCCGGTCACCCTGTCGGCCGAGGATGACGCCCTGCTTGATCTCGTCCAGCGCCAGAGCCTGCGCTTT
TTCGACGAGGGCGGTCATCC

Product: ABC transporter protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 629; Mature: 628

Protein sequence:

>629_residues
MAIPDPSPRPSPEPVKADTDALWPQVRSMARAFWKSPARNRLIFLGGGLATVIALTAFGQMWLNAWNQPFYDSLARKDMD
GFIHQLWVFAGIAFLLLTLNVSQTWLNQSTKVKLREGLVRDLLDDWLQGRRAFRLAFNSEIGVNPDQRIHEDARHLSELT
TDLGIGLLQASLLLATFIGVLWGLSRGIVLHIDGQVLAIPGYMVWCALLYAGIASLLSWKVGSPLVRLNALRYAREADLR
FNLVRVSEHMEGIALHGGEADERDRLSSDLDRVLGIMRRIVGAVTGLTWITAGYGWFTLVAPILVAAPGYFHGNLSFGEL
MMAVGAFIQVQQALRWFIDNVSAIADWRATLLRVSSFREGLQAMDRLGEGRGRIDFAPSTDRQVILSGLEVASPAGAISL
SQPEVVIEPGQHLLIIGDSGTGKTVFFRAIAGLWPWGKGRIGLPPDDDLQDREGDGVMFLPRHPYIPPGTLRAAISYPQA
ADDFDDWALVEALGSMGLAHLAARLNRSARWDKELTDDERRCLAFARVALRKPKVVIMDEAFDVLDDASLGRAMAIFREK
LRKTIVITIGRPEVRDHFFDQVLRLSLDPAGPRFLPDDHATGDADRDAPTAGDDEEGLSVRAVPKESSL

Sequences:

>Translated_629_residues
MAIPDPSPRPSPEPVKADTDALWPQVRSMARAFWKSPARNRLIFLGGGLATVIALTAFGQMWLNAWNQPFYDSLARKDMD
GFIHQLWVFAGIAFLLLTLNVSQTWLNQSTKVKLREGLVRDLLDDWLQGRRAFRLAFNSEIGVNPDQRIHEDARHLSELT
TDLGIGLLQASLLLATFIGVLWGLSRGIVLHIDGQVLAIPGYMVWCALLYAGIASLLSWKVGSPLVRLNALRYAREADLR
FNLVRVSEHMEGIALHGGEADERDRLSSDLDRVLGIMRRIVGAVTGLTWITAGYGWFTLVAPILVAAPGYFHGNLSFGEL
MMAVGAFIQVQQALRWFIDNVSAIADWRATLLRVSSFREGLQAMDRLGEGRGRIDFAPSTDRQVILSGLEVASPAGAISL
SQPEVVIEPGQHLLIIGDSGTGKTVFFRAIAGLWPWGKGRIGLPPDDDLQDREGDGVMFLPRHPYIPPGTLRAAISYPQA
ADDFDDWALVEALGSMGLAHLAARLNRSARWDKELTDDERRCLAFARVALRKPKVVIMDEAFDVLDDASLGRAMAIFREK
LRKTIVITIGRPEVRDHFFDQVLRLSLDPAGPRFLPDDHATGDADRDAPTAGDDEEGLSVRAVPKESSL
>Mature_628_residues
AIPDPSPRPSPEPVKADTDALWPQVRSMARAFWKSPARNRLIFLGGGLATVIALTAFGQMWLNAWNQPFYDSLARKDMDG
FIHQLWVFAGIAFLLLTLNVSQTWLNQSTKVKLREGLVRDLLDDWLQGRRAFRLAFNSEIGVNPDQRIHEDARHLSELTT
DLGIGLLQASLLLATFIGVLWGLSRGIVLHIDGQVLAIPGYMVWCALLYAGIASLLSWKVGSPLVRLNALRYAREADLRF
NLVRVSEHMEGIALHGGEADERDRLSSDLDRVLGIMRRIVGAVTGLTWITAGYGWFTLVAPILVAAPGYFHGNLSFGELM
MAVGAFIQVQQALRWFIDNVSAIADWRATLLRVSSFREGLQAMDRLGEGRGRIDFAPSTDRQVILSGLEVASPAGAISLS
QPEVVIEPGQHLLIIGDSGTGKTVFFRAIAGLWPWGKGRIGLPPDDDLQDREGDGVMFLPRHPYIPPGTLRAAISYPQAA
DDFDDWALVEALGSMGLAHLAARLNRSARWDKELTDDERRCLAFARVALRKPKVVIMDEAFDVLDDASLGRAMAIFREKL
RKTIVITIGRPEVRDHFFDQVLRLSLDPAGPRFLPDDHATGDADRDAPTAGDDEEGLSVRAVPKESSL

Specific function: Unknown

COG id: COG4178

COG function: function code R; ABC-type uncharacterized transport system, permease and ATPase components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI4826958, Length=625, Percent_Identity=24.32, Blast_Score=128, Evalue=2e-29,
Organism=Homo sapiens, GI9945308, Length=541, Percent_Identity=21.6266173752311, Blast_Score=100, Evalue=4e-21,
Organism=Homo sapiens, GI4506341, Length=552, Percent_Identity=21.9202898550725, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI7262393, Length=537, Percent_Identity=22.1601489757914, Blast_Score=86, Evalue=8e-17,
Organism=Escherichia coli, GI1787772, Length=514, Percent_Identity=29.1828793774319, Blast_Score=213, Evalue=2e-56,
Organism=Caenorhabditis elegans, GI17542146, Length=453, Percent_Identity=22.7373068432671, Blast_Score=96, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17532411, Length=497, Percent_Identity=21.327967806841, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17532409, Length=469, Percent_Identity=22.3880597014925, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17558960, Length=218, Percent_Identity=33.4862385321101, Blast_Score=84, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6325110, Length=150, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24638550, Length=542, Percent_Identity=23.9852398523985, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638552, Length=542, Percent_Identity=23.9852398523985, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638554, Length=542, Percent_Identity=23.9852398523985, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638546, Length=542, Percent_Identity=23.9852398523985, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638556, Length=542, Percent_Identity=23.9852398523985, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638548, Length=542, Percent_Identity=23.9852398523985, Blast_Score=102, Evalue=6e-22,
Organism=Drosophila melanogaster, GI24638558, Length=494, Percent_Identity=24.0890688259109, Blast_Score=96, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24643394, Length=496, Percent_Identity=21.9758064516129, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010509
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR017940
- InterPro:   IPR011527
- InterPro:   IPR003593 [H]

Pfam domain/function: PF06472 ABC_membrane_2; PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 69455; Mature: 69323

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS50893 ABC_TRANSPORTER_2 ; PS50929 ABC_TM1F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIPDPSPRPSPEPVKADTDALWPQVRSMARAFWKSPARNRLIFLGGGLATVIALTAFGQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHH
MWLNAWNQPFYDSLARKDMDGFIHQLWVFAGIAFLLLTLNVSQTWLNQSTKVKLREGLVR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHH
DLLDDWLQGRRAFRLAFNSEIGVNPDQRIHEDARHLSELTTDLGIGLLQASLLLATFIGV
HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWGLSRGIVLHIDGQVLAIPGYMVWCALLYAGIASLLSWKVGSPLVRLNALRYAREADLR
HHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCE
FNLVRVSEHMEGIALHGGEADERDRLSSDLDRVLGIMRRIVGAVTGLTWITAGYGWFTLV
EEEEEHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
APILVAAPGYFHGNLSFGELMMAVGAFIQVQQALRWFIDNVSAIADWRATLLRVSSFREG
HHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQAMDRLGEGRGRIDFAPSTDRQVILSGLEVASPAGAISLSQPEVVIEPGQHLLIIGDSG
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHCCCCCCEECCCCCEEECCCCEEEEEECCC
TGKTVFFRAIAGLWPWGKGRIGLPPDDDLQDREGDGVMFLPRHPYIPPGTLRAAISYPQA
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCC
ADDFDDWALVEALGSMGLAHLAARLNRSARWDKELTDDERRCLAFARVALRKPKVVIMDE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
AFDVLDDASLGRAMAIFREKLRKTIVITIGRPEVRDHFFDQVLRLSLDPAGPRFLPDDHA
HHHHHCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TGDADRDAPTAGDDEEGLSVRAVPKESSL
CCCCCCCCCCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure 
AIPDPSPRPSPEPVKADTDALWPQVRSMARAFWKSPARNRLIFLGGGLATVIALTAFGQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHH
MWLNAWNQPFYDSLARKDMDGFIHQLWVFAGIAFLLLTLNVSQTWLNQSTKVKLREGLVR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHH
DLLDDWLQGRRAFRLAFNSEIGVNPDQRIHEDARHLSELTTDLGIGLLQASLLLATFIGV
HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWGLSRGIVLHIDGQVLAIPGYMVWCALLYAGIASLLSWKVGSPLVRLNALRYAREADLR
HHHCCCCEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCE
FNLVRVSEHMEGIALHGGEADERDRLSSDLDRVLGIMRRIVGAVTGLTWITAGYGWFTLV
EEEEEHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
APILVAAPGYFHGNLSFGELMMAVGAFIQVQQALRWFIDNVSAIADWRATLLRVSSFREG
HHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQAMDRLGEGRGRIDFAPSTDRQVILSGLEVASPAGAISLSQPEVVIEPGQHLLIIGDSG
HHHHHHHCCCCCCEECCCCCCHHHHHHHHHHCCCCCCEECCCCCEEECCCCEEEEEECCC
TGKTVFFRAIAGLWPWGKGRIGLPPDDDLQDREGDGVMFLPRHPYIPPGTLRAAISYPQA
CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCC
ADDFDDWALVEALGSMGLAHLAARLNRSARWDKELTDDERRCLAFARVALRKPKVVIMDE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECC
AFDVLDDASLGRAMAIFREKLRKTIVITIGRPEVRDHFFDQVLRLSLDPAGPRFLPDDHA
HHHHHCCHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
TGDADRDAPTAGDDEEGLSVRAVPKESSL
CCCCCCCCCCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]