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The map label for this gene is yjcC [C]

Identifier: 83594560

GI number: 83594560

Start: 3723653

End: 3725437

Strand: Reverse

Name: yjcC [C]

Synonym: Rru_A3230

Alternate gene names: 83594560

Gene position: 3725437-3723653 (Counterclockwise)

Preceding gene: 83594561

Following gene: 83594559

Centisome position: 85.59

GC content: 64.59

Gene sequence:

>1785_bases
ATGACCGTTCAAGCATCTTGCGTTGCCGATCTGTCTTCCCTGGGCCGTGACGTCGCTCTTGATCCGGTGATCAGCCTGCG
CAGTGGCCGGGTCATCGGCTATCAGGCGGTGGCCGGTCCGCCCCCAGGGGGGCGCGAGGAAGACGATCTTCTTCTGCGCG
AGGCGATCGAGGCGGCGGTCTGGTCGTCGGCCATCGCCTTGTTCGCCGCCGTATCGGCCGGGCGCGACCAGCGCCTGTTT
CTTGGCCTTGATTTCGGTCTTGTCGTGCGCTGGCCCGATATGGCGGCGCGGCTGGCCATGCTTCTTGATGCCCATGGCGT
CGATCGCCGGGTGATCACGCTCAGCCTGTCCGAGCGCCGGTCGATCCTTGATTTGGGCGGCGGGTCTGGCGAGCGGGCGC
TGGACCGGGTGGCCGGAGCGGTGGTGCAGATGCGCGGCGCTGTCGGCTCGATCGCCCTGGATGGCTTTGGCGGCGGTCAT
GCCGGCTTGGCGTTGTTGGCCGCGGTGAAGCCCGATTATGTCGTGCTTGATCCCTATTTCGTCTCGACCCAGGCGATCGA
CCAGACGCGGCGGTTGTTTCTGGGGCATCTGGTCGACGTGGCCCATTTGCTGGGCGCCCAGGTGATCGCCCCCCAGGTCG
AGCATCTCGCCGATTATCATGCCTGCCGCGACGCCGGCTGCGATCTGGTGCGCGGGCCGGTGCTGGCCAAGCCCGACCGT
GACCCCCGGCGCCTGCCCGAAGTCTATCCCCAGGTCGCCGCCCTCAATGCCACCAGCCAGCGCCGAGGCCGTGGCGACCA
ACATCTGGTGGCCGCCCAGATGGACGAAATCGATCCCTTGATGATTTCGACAAAGATGGCCGATGTGTTCGAGCGCTTTC
GCCGCCAGAAGGATCGCACGTTCTTTCCGGTGGTCGACGAGCGCGGCGAACCGCTGGGCATCGTCCGCGAGGTCGATCTC
AAGGAATACACCTATTCGCTCTATGGCAAGGATCTGATCGGCAACAAAGCCCTGGGCCGCACCCTGAGCGCCTTTCTCAC
GCGCTGTCCGCGCGTTGACATCGATACCCGGGCCGAAAAGATCCTGGAGGCTTTTTCCACGACTCCCTCCAGCGACGGGC
TGATCATCACCCAGGATGGCCGGTATCGGGGGTTTTTGACGGCGGCTTCGCTGTTGCGGGTCATCAACGACAAGAACCTT
GAGGTCGCCCGCGATCAGAATCCGCTGACCCGTCTGCCGGGGAACACGGTGATCAACACCGAATTGGGTGAAATCCTGGC
CGATGATCGCCAGGGGGCCAGTCTGGTCTATCTGGATTTCGACCATTTCAAGCCGTTCAACGACAAATACGGCTTCCGCC
AGGGCGATCGGGCGATCTTGCTGTTTGCCGATCTGCTGCGCAGCCAATTGGCCGAGGCCGGGTTCTTCATCGGTCATGTC
GGCGGCGACGACTTTTTCGCCGCTCTGCGCGAAGGGGTGCCGGCGGCGGTGACGGCGCGCATCCGCGCCCTGATCGACAA
GTTCGCCGCCGATGTCACGGCCTTCTACGACGACGAGACCCGCCAAGCCGGCTGTGTGCTGGCGCGCGATCGCGACGGGA
TCGAACGCCGCCTGCCGCTGCTTTCGGTCAGCGCCGCGCTGGTCCATCTCGCCCCCGGTCATGCCATCGGCGATCTTGAT
CGCATCGGCGGCGTGATCGCCCGCCTGAAAAAGGCCGCCAAGCAATCGCCCTGTCATCTGGCCGAAACGGTGGCTGGACC
GGATATCCTGGTCGAAGAGCTTTAA

Upstream 100 bases:

>100_bases
TTGTTTCTTTGTGGATCGGAGGTTGACGATTCACCGCCGCCGTCGGCTATCGTATCGACGTCCGCCGTGCCGGGCATGGC
GGGGGTGAAGAGGATGGCGC

Downstream 100 bases:

>100_bases
GACCTAAGTCTCGGACTGGTTCCGCCCTCTGACTTTTGGCATACTTGCTCCCAGCGCGCCCGGGCAAGCGATATCGGGCG
GGGTCTGGACCGGGTCGCCG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: Response Regulator Receiver Modulated Diguanylate Cyclase; Diguanylate Cyclase; EAL/GGDEF Domain-Containing Protein; GGDEF Domain-Containing Protein; Cyclic Diguanylate Phosphodiesterase Domain Protein; GGDEF Domain Protein; Signal Transduction Protein; Signaling Protein; Sensory Box/GGDEF Family Protein; EAL Domain-Containing Protein; GGDEF/EAL Sensory Box Protein; Histidine Kinase; Two-Component System Response Regulator Receiver; Response Regulator; EAL Domain Protein; Sensor Protein; Response Regulator Receiver; Sensory Box Histidine Kinase/Response Regulator; Ggdef Domain Protein; Diguanylate Cyclase/Phosphodiesterase Family Protein; EAL Domain Proteni; Signal Protein; EAL Domain/GGDEF Domain-Containing Protein; EAL Domain/GGDEF Domain Protein; CheY-Like Response Regulator Modulated Diguanylate Cyclase; Diguanylate Phosphodiesterase; GGDEFCBS:EAL Domain-Containing Protein; GGDEF Domain/HAMP Domain-Containing Protein; EAL Domain-Containing; Diguanylate Cyclase/Phosphodiesterase With Cbs Domains; Methyl-Accepting Chemotaxis Sensory Transducer; Eal/Ggdef Domain Protein

Number of amino acids: Translated: 594; Mature: 593

Protein sequence:

>594_residues
MTVQASCVADLSSLGRDVALDPVISLRSGRVIGYQAVAGPPPGGREEDDLLLREAIEAAVWSSAIALFAAVSAGRDQRLF
LGLDFGLVVRWPDMAARLAMLLDAHGVDRRVITLSLSERRSILDLGGGSGERALDRVAGAVVQMRGAVGSIALDGFGGGH
AGLALLAAVKPDYVVLDPYFVSTQAIDQTRRLFLGHLVDVAHLLGAQVIAPQVEHLADYHACRDAGCDLVRGPVLAKPDR
DPRRLPEVYPQVAALNATSQRRGRGDQHLVAAQMDEIDPLMISTKMADVFERFRRQKDRTFFPVVDERGEPLGIVREVDL
KEYTYSLYGKDLIGNKALGRTLSAFLTRCPRVDIDTRAEKILEAFSTTPSSDGLIITQDGRYRGFLTAASLLRVINDKNL
EVARDQNPLTRLPGNTVINTELGEILADDRQGASLVYLDFDHFKPFNDKYGFRQGDRAILLFADLLRSQLAEAGFFIGHV
GGDDFFAALREGVPAAVTARIRALIDKFAADVTAFYDDETRQAGCVLARDRDGIERRLPLLSVSAALVHLAPGHAIGDLD
RIGGVIARLKKAAKQSPCHLAETVAGPDILVEEL

Sequences:

>Translated_594_residues
MTVQASCVADLSSLGRDVALDPVISLRSGRVIGYQAVAGPPPGGREEDDLLLREAIEAAVWSSAIALFAAVSAGRDQRLF
LGLDFGLVVRWPDMAARLAMLLDAHGVDRRVITLSLSERRSILDLGGGSGERALDRVAGAVVQMRGAVGSIALDGFGGGH
AGLALLAAVKPDYVVLDPYFVSTQAIDQTRRLFLGHLVDVAHLLGAQVIAPQVEHLADYHACRDAGCDLVRGPVLAKPDR
DPRRLPEVYPQVAALNATSQRRGRGDQHLVAAQMDEIDPLMISTKMADVFERFRRQKDRTFFPVVDERGEPLGIVREVDL
KEYTYSLYGKDLIGNKALGRTLSAFLTRCPRVDIDTRAEKILEAFSTTPSSDGLIITQDGRYRGFLTAASLLRVINDKNL
EVARDQNPLTRLPGNTVINTELGEILADDRQGASLVYLDFDHFKPFNDKYGFRQGDRAILLFADLLRSQLAEAGFFIGHV
GGDDFFAALREGVPAAVTARIRALIDKFAADVTAFYDDETRQAGCVLARDRDGIERRLPLLSVSAALVHLAPGHAIGDLD
RIGGVIARLKKAAKQSPCHLAETVAGPDILVEEL
>Mature_593_residues
TVQASCVADLSSLGRDVALDPVISLRSGRVIGYQAVAGPPPGGREEDDLLLREAIEAAVWSSAIALFAAVSAGRDQRLFL
GLDFGLVVRWPDMAARLAMLLDAHGVDRRVITLSLSERRSILDLGGGSGERALDRVAGAVVQMRGAVGSIALDGFGGGHA
GLALLAAVKPDYVVLDPYFVSTQAIDQTRRLFLGHLVDVAHLLGAQVIAPQVEHLADYHACRDAGCDLVRGPVLAKPDRD
PRRLPEVYPQVAALNATSQRRGRGDQHLVAAQMDEIDPLMISTKMADVFERFRRQKDRTFFPVVDERGEPLGIVREVDLK
EYTYSLYGKDLIGNKALGRTLSAFLTRCPRVDIDTRAEKILEAFSTTPSSDGLIITQDGRYRGFLTAASLLRVINDKNLE
VARDQNPLTRLPGNTVINTELGEILADDRQGASLVYLDFDHFKPFNDKYGFRQGDRAILLFADLLRSQLAEAGFFIGHVG
GDDFFAALREGVPAAVTARIRALIDKFAADVTAFYDDETRQAGCVLARDRDGIERRLPLLSVSAALVHLAPGHAIGDLDR
IGGVIARLKKAAKQSPCHLAETVAGPDILVEEL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64451; Mature: 64319

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQASCVADLSSLGRDVALDPVISLRSGRVIGYQAVAGPPPGGREEDDLLLREAIEAAV
CCCCHHHHHHHHHCCCCEECCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
WSSAIALFAAVSAGRDQRLFLGLDFGLVVRWPDMAARLAMLLDAHGVDRRVITLSLSERR
HHHHHHHHHHHHCCCCCEEEEEECCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHCCC
SILDLGGGSGERALDRVAGAVVQMRGAVGSIALDGFGGGHAGLALLAAVKPDYVVLDPYF
CEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCEE
VSTQAIDQTRRLFLGHLVDVAHLLGAQVIAPQVEHLADYHACRDAGCDLVRGPVLAKPDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCC
DPRRLPEVYPQVAALNATSQRRGRGDQHLVAAQMDEIDPLMISTKMADVFERFRRQKDRT
CHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCE
FFPVVDERGEPLGIVREVDLKEYTYSLYGKDLIGNKALGRTLSAFLTRCPRVDIDTRAEK
ECCEECCCCCCCCEEEECCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHH
ILEAFSTTPSSDGLIITQDGRYRGFLTAASLLRVINDKNLEVARDQNPLTRLPGNTVINT
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEECC
ELGEILADDRQGASLVYLDFDHFKPFNDKYGFRQGDRAILLFADLLRSQLAEAGFFIGHV
HHHHHHHCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCEEEEEC
GGDDFFAALREGVPAAVTARIRALIDKFAADVTAFYDDETRQAGCVLARDRDGIERRLPL
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCHHHHCCH
LSVSAALVHLAPGHAIGDLDRIGGVIARLKKAAKQSPCHLAETVAGPDILVEEL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHCCC
>Mature Secondary Structure 
TVQASCVADLSSLGRDVALDPVISLRSGRVIGYQAVAGPPPGGREEDDLLLREAIEAAV
CCCHHHHHHHHHCCCCEECCCHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
WSSAIALFAAVSAGRDQRLFLGLDFGLVVRWPDMAARLAMLLDAHGVDRRVITLSLSERR
HHHHHHHHHHHHCCCCCEEEEEECCCEEEECHHHHHHHHHHHHCCCCCCEEEEEEHHCCC
SILDLGGGSGERALDRVAGAVVQMRGAVGSIALDGFGGGHAGLALLAAVKPDYVVLDPYF
CEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCEE
VSTQAIDQTRRLFLGHLVDVAHLLGAQVIAPQVEHLADYHACRDAGCDLVRGPVLAKPDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCC
DPRRLPEVYPQVAALNATSQRRGRGDQHLVAAQMDEIDPLMISTKMADVFERFRRQKDRT
CHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCE
FFPVVDERGEPLGIVREVDLKEYTYSLYGKDLIGNKALGRTLSAFLTRCPRVDIDTRAEK
ECCEECCCCCCCCEEEECCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHH
ILEAFSTTPSSDGLIITQDGRYRGFLTAASLLRVINDKNLEVARDQNPLTRLPGNTVINT
HHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEECC
ELGEILADDRQGASLVYLDFDHFKPFNDKYGFRQGDRAILLFADLLRSQLAEAGFFIGHV
HHHHHHHCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCEEEEEC
GGDDFFAALREGVPAAVTARIRALIDKFAADVTAFYDDETRQAGCVLARDRDGIERRLPL
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEECCCCCHHHHCCH
LSVSAALVHLAPGHAIGDLDRIGGVIARLKKAAKQSPCHLAETVAGPDILVEEL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA