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The map label for this gene is yqgF [C]

Identifier: 83594508

GI number: 83594508

Start: 3670243

End: 3670728

Strand: Direct

Name: yqgF [C]

Synonym: Rru_A3178

Alternate gene names: 83594508

Gene position: 3670243-3670728 (Clockwise)

Preceding gene: 83594504

Following gene: 83594510

Centisome position: 84.32

GC content: 68.93

Gene sequence:

>486_bases
ATGCCCATCTGTTCTTTGCAAACCTTTGCCGACGCCCTGCCCCCCGGTCGCCCGGTGCTCGGGCTTGACCTGGGCACCCG
CACCATCGGCGTCGCCACCAGCGATGTCCGCCTGACCCTGGCCACGCCGATCATCACCATCAAGCGCCGCAAGTTCACCT
TGGATGTCCAGGAGTTGTTCGCCCTTGCCGATGGGCGGGCGGCGGCCGGGCTGGTGCTTGGCCTGCCCGTCGAGATGGAC
GGCAGCGAGGGACCGCGCTGTCAGGCGACCCGCGCCTTCGCCCGCAATCTGCTGGCCTTGCGCGATCTGCCGGTGCTGCT
GTGGGATGAAAGGCTGTCGACCGCCGCCGTCAACCGCTTCCTGGTCGGCGAAGCCGATATGACCCGGGCACGGCGCGCCG
AGGTCGTCGACCGGGCGGCGGCGGCCTATATCCTGCAAGGCGCCCTCGACGCCCTGGATCGTCAGCGCCCCGAACAGGCG
TTTTAG

Upstream 100 bases:

>100_bases
GCTGAACTCCCGCACGGGGGCAAAATCGGGCCCACCGCGGGGCCGGACGGCGCCGCGCTTGGTTCAGTCCCATCTTTAGC
GGCGCCCCGGAAGGACCGCA

Downstream 100 bases:

>100_bases
CCCACAATGCGGACCGACGACTCCTCCTCCTCGGCGCCCCTATCCTCGGCGGCTCCGTCGGCGAGCCTGCCGACCTTAGG
CAGGGCGCGGGCCGCGGCGT

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELFALADGRAAAGLVLGLPVEMD
GSEGPRCQATRAFARNLLALRDLPVLLWDERLSTAAVNRFLVGEADMTRARRAEVVDRAAAAYILQGALDALDRQRPEQA
F

Sequences:

>Translated_161_residues
MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELFALADGRAAAGLVLGLPVEMD
GSEGPRCQATRAFARNLLALRDLPVLLWDERLSTAAVNRFLVGEADMTRARRAEVVDRAAAAYILQGALDALDRQRPEQA
F
>Mature_160_residues
PICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELFALADGRAAAGLVLGLPVEMDG
SEGPRCQATRAFARNLLALRDLPVLLWDERLSTAAVNRFLVGEADMTRARRAEVVDRAAAAYILQGALDALDRQRPEQAF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_RHORT (Q2RPH2)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_428260.1
- ProteinModelPortal:   Q2RPH2
- SMR:   Q2RPH2
- STRING:   Q2RPH2
- GeneID:   3836624
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A3178
- NMPDR:   fig|1085.1.peg.820
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q2RPH2
- BioCyc:   RRUB269796:RRU_A3178-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17424; Mature: 17293

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF
CCCCCHHHHHHHCCCCCCEEEEECCCEEEEEECCCEEEEEECCEEEEECCEEEECHHHHH
ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALRDLPVLLWDERLSTAAVNRF
HHCCCCCCCCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
LVGEADMTRARRAEVVDRAAAAYILQGALDALDRQRPEQAF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PICSLQTFADALPPGRPVLGLDLGTRTIGVATSDVRLTLATPIITIKRRKFTLDVQELF
CCCCHHHHHHHCCCCCCEEEEECCCEEEEEECCCEEEEEECCEEEEECCEEEECHHHHH
ALADGRAAAGLVLGLPVEMDGSEGPRCQATRAFARNLLALRDLPVLLWDERLSTAAVNRF
HHCCCCCCCCEEEECCEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
LVGEADMTRARRAEVVDRAAAAYILQGALDALDRQRPEQAF
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA