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The map label for this gene is yibD [C]

Identifier: 83594420

GI number: 83594420

Start: 3553656

End: 3554588

Strand: Reverse

Name: yibD [C]

Synonym: Rru_A3090

Alternate gene names: 83594420

Gene position: 3554588-3553656 (Counterclockwise)

Preceding gene: 83594421

Following gene: 83594416

Centisome position: 81.66

GC content: 70.53

Gene sequence:

>933_bases
ATGAACCCGGGCGGCGCCGAGGTGTCGGTGGTGATTCCGGCCTGGAACGCCGAAGCCACCCTCGGCCGGGCCCTGGCCTC
GGTGCGGGCGCAAACCCTGGCGCCCCGTCAGGTGATCGTGGTGAACGACGGATCGAGCGACGCCACGCCCGAGATCGCGG
CGCGGATGGCCACCAAGACCTTCCCCGTGACGGTGATCGACCGCACGGGGCGGGGGAGCGGGCCGGCGGCGGCGCGCAAC
GCCGGCATCGCCGCCGCCGGCGAACCCTTCGTCGCCTTTCTCGATGCCGACGACGTCTGGCTTCCCGACAAGTTGGCCCG
GCAGATGGCCGCCTTGCGCGCGTCGCCAGACGCCGTGCTCTGCTGTTGTGATGCCCAATGGGTCGGCGAGGACGCGCCCG
CGCGGACCGCCCATCCCACCATCTATGAGGATCGCCCGATCAAGGGCGGGGCCGAGGCCTGGAAGGAGATCTTGCTTGAT
TGCTACGTCGGCACGCCCTGCGTGGTCGCCCGCCGCGCCGCCCTGATCGAAGCCGGCGGCTTTGATGAAAGGCTGGTGGT
TGGCGAGGATCAGGATCTGTGGATCCGCCTTGCCCTGCAAGGGCCGGTGATCGCCCTGCCCGAGGTTCTGGTGCGCTACG
GCCTGTCCGCCGACAGCCATATGGCCCGCCACCGCGCCCTGGCCGCAAGCCTGTGGTTGCCCCATTTCGAGGCCCTGGTC
AGCGGGTTGGGCGCCCGGCTCTCGGCGGGGGAACGCGATGCCATCCTCCGCGCCCGTCTGTGGCGGATGGCGCGGAGTGT
TTATCTGGATGGTCGGAAAGATCTGGGGCTGAGTTTGATGGCCAGGGCGGTCGCCCATGGGCTGCCCCGGCGCGCCCGGA
TGGTATTCCTGGCACGCGCCCGTCTCCGCTCCGCCTTGGGGCGGAACGGCTGA

Upstream 100 bases:

>100_bases
ATTTGCTGGCGGAGACCCGCATGGTGTCGCCGGAGCGCTCCGCCGATCTGCGCTCCGACGACGCGGCCCTGGCGCCGGCA
AGGCCGCTGGCCGCCCTGCC

Downstream 100 bases:

>100_bases
CCCGGGCGGGGATGGGGCGGGTTACTCGATATTCTTGGCGGCGGTCATGGCGACGATCAGCACCATCAGCAGCACGGTCA
GGGCCAGTCCGACGAACAGC

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MNPGGAEVSVVIPAWNAEATLGRALASVRAQTLAPRQVIVVNDGSSDATPEIAARMATKTFPVTVIDRTGRGSGPAAARN
AGIAAAGEPFVAFLDADDVWLPDKLARQMAALRASPDAVLCCCDAQWVGEDAPARTAHPTIYEDRPIKGGAEAWKEILLD
CYVGTPCVVARRAALIEAGGFDERLVVGEDQDLWIRLALQGPVIALPEVLVRYGLSADSHMARHRALAASLWLPHFEALV
SGLGARLSAGERDAILRARLWRMARSVYLDGRKDLGLSLMARAVAHGLPRRARMVFLARARLRSALGRNG

Sequences:

>Translated_310_residues
MNPGGAEVSVVIPAWNAEATLGRALASVRAQTLAPRQVIVVNDGSSDATPEIAARMATKTFPVTVIDRTGRGSGPAAARN
AGIAAAGEPFVAFLDADDVWLPDKLARQMAALRASPDAVLCCCDAQWVGEDAPARTAHPTIYEDRPIKGGAEAWKEILLD
CYVGTPCVVARRAALIEAGGFDERLVVGEDQDLWIRLALQGPVIALPEVLVRYGLSADSHMARHRALAASLWLPHFEALV
SGLGARLSAGERDAILRARLWRMARSVYLDGRKDLGLSLMARAVAHGLPRRARMVFLARARLRSALGRNG
>Mature_310_residues
MNPGGAEVSVVIPAWNAEATLGRALASVRAQTLAPRQVIVVNDGSSDATPEIAARMATKTFPVTVIDRTGRGSGPAAARN
AGIAAAGEPFVAFLDADDVWLPDKLARQMAALRASPDAVLCCCDAQWVGEDAPARTAHPTIYEDRPIKGGAEAWKEILLD
CYVGTPCVVARRAALIEAGGFDERLVVGEDQDLWIRLALQGPVIALPEVLVRYGLSADSHMARHRALAASLWLPHFEALV
SGLGARLSAGERDAILRARLWRMARSVYLDGRKDLGLSLMARAVAHGLPRRARMVFLARARLRSALGRNG

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=127, Percent_Identity=31.496062992126, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 33135; Mature: 33135

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPGGAEVSVVIPAWNAEATLGRALASVRAQTLAPRQVIVVNDGSSDATPEIAARMATKT
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCC
FPVTVIDRTGRGSGPAAARNAGIAAAGEPFVAFLDADDVWLPDKLARQMAALRASPDAVL
CCEEEEECCCCCCCCCHHHCCCCEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
CCCDAQWVGEDAPARTAHPTIYEDRPIKGGAEAWKEILLDCYVGTPCVVARRAALIEAGG
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
FDERLVVGEDQDLWIRLALQGPVIALPEVLVRYGLSADSHMARHRALAASLWLPHFEALV
CCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
SGLGARLSAGERDAILRARLWRMARSVYLDGRKDLGLSLMARAVAHGLPRRARMVFLARA
HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
RLRSALGRNG
HHHHHHCCCC
>Mature Secondary Structure
MNPGGAEVSVVIPAWNAEATLGRALASVRAQTLAPRQVIVVNDGSSDATPEIAARMATKT
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCC
FPVTVIDRTGRGSGPAAARNAGIAAAGEPFVAFLDADDVWLPDKLARQMAALRASPDAVL
CCEEEEECCCCCCCCCHHHCCCCEECCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEE
CCCDAQWVGEDAPARTAHPTIYEDRPIKGGAEAWKEILLDCYVGTPCVVARRAALIEAGG
EEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
FDERLVVGEDQDLWIRLALQGPVIALPEVLVRYGLSADSHMARHRALAASLWLPHFEALV
CCCEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
SGLGARLSAGERDAILRARLWRMARSVYLDGRKDLGLSLMARAVAHGLPRRARMVFLARA
HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
RLRSALGRNG
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA