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The map label for this gene is ygfZ [C]

Identifier: 83594272

GI number: 83594272

Start: 3388714

End: 3389652

Strand: Direct

Name: ygfZ [C]

Synonym: Rru_A2940

Alternate gene names: 83594272

Gene position: 3388714-3389652 (Clockwise)

Preceding gene: 83594265

Following gene: 83594273

Centisome position: 77.85

GC content: 70.29

Gene sequence:

>939_bases
ATGACCCCTGCCGACCCTTCCGCCGTCAGCCCGCCGGTGCTGTGCCCCCGCCCCGATCGCGGCGTTCTCGGCCTAAGCGG
CGCGGACCGCGTGAGCTTCCTTCAGGGGTTGGTCTCCAATGACGTGACCCGGGCCGGACCGGAACAGGCGTTATGGGCGG
CATTCCTCACCCCCCAGGGCAAATATCTCCATGATTTCTTCGTCGTTTCCGTTGGCGAGGGGGAAAGCGCCCGCTTGCTG
CTGGTCGGCGAGGCGGCCCGCCTGGAAGACCTGCGCGCCCGCCTGTCGCGCTACCGCCTGCGCTCGAAGGTCACCCTCGA
TCTTGCCGGCGGTTGGACGGTGGCGGTGATCCCCGGCCGCAACGCGGCGGCCAGCCTGGGTTTACCCGATCGGCCGGGGG
CGATGCGCGCCCTTGATGGCGGCGGCCTCGCCTTCGTCGATCCCCGGCTGAGCGCGGCGGGCGTTCACCTGCTGCTGCCC
GAAGCGGCCGCCAAGCCGCCTTTGCCCCTCGGCGAGGAAAGCCTGTGGCAGGCCCATCGCTTAGCCCTGGGCCTGCCCGA
GGGCAGCGACGACCTTGAGCCCGAAAAGGCCCTGCTTCTGGAAAACGGCTTCGAGGAACTGGGCGGCGTGGACTTCAAGA
AGGGCTGTTACATGGGCCAGGAACTGACGGCGCGGACCAAATACCGCGGCCTCGTCAAAAAACGCCTGATCCCCGTCGCC
ATCGACGGCCCCCTGCCCGCCCCGGGCAGCGCGCTGCGCACCGGGGAAGGCCTGGACGCCGGAGAGATGCGCTCGGGTCT
GGTGCGCGCCGATGGCCAGACCCTCGGCCTCGCCCTGCTCCGCCTCGCCCGCCTCGGCGGCCCGATCCTCGCCGAGGATG
GCGGCGCCACCCTGACACCGTCGATCCCGTCGTGGATGATCATCCCAACGGCGGAGTGA

Upstream 100 bases:

>100_bases
CCCCACCCCCCGGCTTGCCAACGCCGCCGCCGCACCATACCTGCGAAGGGGTGTGTGGTGATACCCACCGCGTCCCGCCC
ATCCCTGCCGGAGTGTCCCG

Downstream 100 bases:

>100_bases
TCGAGCATTCCACTTTCCCGCGATAACAACCATTGGTGAATTTCATTTGCCTCCATTGCGGCAATGCCGCATCGTCGCCC
TATGATCACCAAGCCAATCA

Product: glycine cleavage T protein (aminomethyl transferase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTPADPSAVSPPVLCPRPDRGVLGLSGADRVSFLQGLVSNDVTRAGPEQALWAAFLTPQGKYLHDFFVVSVGEGESARLL
LVGEAARLEDLRARLSRYRLRSKVTLDLAGGWTVAVIPGRNAAASLGLPDRPGAMRALDGGGLAFVDPRLSAAGVHLLLP
EAAAKPPLPLGEESLWQAHRLALGLPEGSDDLEPEKALLLENGFEELGGVDFKKGCYMGQELTARTKYRGLVKKRLIPVA
IDGPLPAPGSALRTGEGLDAGEMRSGLVRADGQTLGLALLRLARLGGPILAEDGGATLTPSIPSWMIIPTAE

Sequences:

>Translated_312_residues
MTPADPSAVSPPVLCPRPDRGVLGLSGADRVSFLQGLVSNDVTRAGPEQALWAAFLTPQGKYLHDFFVVSVGEGESARLL
LVGEAARLEDLRARLSRYRLRSKVTLDLAGGWTVAVIPGRNAAASLGLPDRPGAMRALDGGGLAFVDPRLSAAGVHLLLP
EAAAKPPLPLGEESLWQAHRLALGLPEGSDDLEPEKALLLENGFEELGGVDFKKGCYMGQELTARTKYRGLVKKRLIPVA
IDGPLPAPGSALRTGEGLDAGEMRSGLVRADGQTLGLALLRLARLGGPILAEDGGATLTPSIPSWMIIPTAE
>Mature_311_residues
TPADPSAVSPPVLCPRPDRGVLGLSGADRVSFLQGLVSNDVTRAGPEQALWAAFLTPQGKYLHDFFVVSVGEGESARLLL
VGEAARLEDLRARLSRYRLRSKVTLDLAGGWTVAVIPGRNAAASLGLPDRPGAMRALDGGGLAFVDPRLSAAGVHLLLPE
AAAKPPLPLGEESLWQAHRLALGLPEGSDDLEPEKALLLENGFEELGGVDFKKGCYMGQELTARTKYRGLVKKRLIPVAI
DGPLPAPGSALRTGEGLDAGEMRSGLVRADGQTLGLALLRLARLGGPILAEDGGATLTPSIPSWMIIPTAE

Specific function: Folate-binding protein involved in regulating the level of ATP-dnaA and in the modification of some tRNAs. It is probably a key factor in regulatory networks that act via tRNA modification, such as initiation of chromosomal replication [H]

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tRNA-modifying ygfZ family [H]

Homologues:

Organism=Homo sapiens, GI58197556, Length=312, Percent_Identity=34.9358974358974, Blast_Score=125, Evalue=4e-29,
Organism=Escherichia coli, GI1789265, Length=283, Percent_Identity=27.208480565371, Blast_Score=66, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24645123, Length=312, Percent_Identity=28.8461538461538, Blast_Score=106, Evalue=2e-23,

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR013977
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T; PF08669 GCV_T_C [H]

EC number: NA

Molecular weight: Translated: 32734; Mature: 32603

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPADPSAVSPPVLCPRPDRGVLGLSGADRVSFLQGLVSNDVTRAGPEQALWAAFLTPQG
CCCCCCCCCCCCEECCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHEEECCCC
KYLHDFFVVSVGEGESARLLLVGEAARLEDLRARLSRYRLRSKVTLDLAGGWTVAVIPGR
CEEEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEECCC
NAAASLGLPDRPGAMRALDGGGLAFVDPRLSAAGVHLLLPEAAAKPPLPLGEESLWQAHR
CCEEECCCCCCCCCEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
LALGLPEGSDDLEPEKALLLENGFEELGGVDFKKGCYMGQELTARTKYRGLVKKRLIPVA
HEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCEEEEE
IDGPLPAPGSALRTGEGLDAGEMRSGLVRADGQTLGLALLRLARLGGPILAEDGGATLTP
ECCCCCCCCCCCCCCCCCCHHHHHCCEEECCCCHHHHHHHHHHHHCCCEEECCCCCEECC
SIPSWMIIPTAE
CCCCEEEEECCC
>Mature Secondary Structure 
TPADPSAVSPPVLCPRPDRGVLGLSGADRVSFLQGLVSNDVTRAGPEQALWAAFLTPQG
CCCCCCCCCCCEECCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHEEECCCC
KYLHDFFVVSVGEGESARLLLVGEAARLEDLRARLSRYRLRSKVTLDLAGGWTVAVIPGR
CEEEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHEEEEEECCCEEEEEECCC
NAAASLGLPDRPGAMRALDGGGLAFVDPRLSAAGVHLLLPEAAAKPPLPLGEESLWQAHR
CCEEECCCCCCCCCEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
LALGLPEGSDDLEPEKALLLENGFEELGGVDFKKGCYMGQELTARTKYRGLVKKRLIPVA
HEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHCEEEEE
IDGPLPAPGSALRTGEGLDAGEMRSGLVRADGQTLGLALLRLARLGGPILAEDGGATLTP
ECCCCCCCCCCCCCCCCCCHHHHHCCEEECCCCHHHHHHHHHHHHCCCEEECCCCCEECC
SIPSWMIIPTAE
CCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA