Click here to switch to the map view.

The map label for this gene is lpsE [H]

Identifier: 83594270

GI number: 83594270

Start: 3386352

End: 3387407

Strand: Reverse

Name: lpsE [H]

Synonym: Rru_A2938

Alternate gene names: 83594270

Gene position: 3387407-3386352 (Counterclockwise)

Preceding gene: 83594271

Following gene: 83594269

Centisome position: 77.82

GC content: 67.33

Gene sequence:

>1056_bases
ATGGGTTTGCGCATTCTTCAAGTCATGGCCGGTGCCGAACAGGGGGGCGCCGAGCTGTTCTTCGAACGCCTGTGCATCGC
CTTGCACCGCGCCGGTCTGCACCAGCACGTGGTGATGCGCGAGGCCAGCGTCCGCTTGGCGCGGATGCGCGAGGCCGGGT
TGCGCCCGGTGCTGCTGCCCTTTGGCGGGCGCTTCGACTTCAAGACCGGCCGGGCGCTGCGCCAGGAGATCGCCCGCTTC
CAGCCCGCCGTGGTCCTAAGCTGGATGAACCGCGCCACCCGCTTCGTCCGTCCGGGCAATCACGTGTTCTGCGCCCGGCT
CGGCGGCTATTACGATCTGAAGTACTATCGCGGCTGCGACTGGTTGGTCTGCAACACCGAAGACATCCGCGATTATGTGA
TCAAGCAGGGCTTTCCCGCCGAACGCGCCGTCCATCTGCCCAATTTCGTGCCCCAGCAGCATATGGCGCCGACCGCGCGC
AAGCTGCTTTACACCCCGGAAAACGCCCCCCTGGTGCTGGCTTTGGGCCGGCTGCACGAGAACAAGGCCTTTGACGTGCT
GTTGCGCGCCCTGGCCCTGGTTCCCGATGTCTATCTGTGGCTGGCGGGCGAAGGGCCCTTGCGCGCCTCGCTGGAAACCC
TGGCCCAGGATCTCGGCGTCAAGCCCCGGGTGCGCTTCCTCGGCTGGCGCGACGATACCCCGGCCCTGTACGCCGCCGCC
GATCTGGTGGTTTTCCCCTCGCGTCACGAGCCGCTGGGCAATGTGGTTCTGGAAGCCTGGGCCCAGCGCACGCCGATGGT
GTCGACGCGCACCGATGGTCCGGCCCGGCTGATCACCTCGGGACACAACGGCCTGCTGGTGCCGATCGACGATCACCGGG
CGATGGCCGGGGCGATCCGTCAGGCCTTTGGCGAACCGGGCCTGGGCGAGGCGATGGCGCGGGCGGGCTGGGACAGCTAT
CTCGCGGCCTATACCGAGGAGAAGGTGGTGGCGAGCTACCGGAGTTTTTTTGAAACCATCGTCGCCGAGCGCTCCGGCGC
CGTCGACCGTGGGTGA

Upstream 100 bases:

>100_bases
TGATATCGACCGTATTTTAACCGCCTGAGTTTTCTCCTCCGGCGCCCCCTGCCGGGTCGCCTGATTTTCCTTTTCTTCCC
GGTGATTTATCGGAGTCCCC

Downstream 100 bases:

>100_bases
GCGGACGGGGACCGGCGCGGCATGTGTGGCATAGCGGGCATGGTGACCAAACTCGGGCGGAGCGTGCCCGAAGGACTGGC
CGACCGATTCGCGCAAAAGC

Product: glycosyl transferase, group 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MGLRILQVMAGAEQGGAELFFERLCIALHRAGLHQHVVMREASVRLARMREAGLRPVLLPFGGRFDFKTGRALRQEIARF
QPAVVLSWMNRATRFVRPGNHVFCARLGGYYDLKYYRGCDWLVCNTEDIRDYVIKQGFPAERAVHLPNFVPQQHMAPTAR
KLLYTPENAPLVLALGRLHENKAFDVLLRALALVPDVYLWLAGEGPLRASLETLAQDLGVKPRVRFLGWRDDTPALYAAA
DLVVFPSRHEPLGNVVLEAWAQRTPMVSTRTDGPARLITSGHNGLLVPIDDHRAMAGAIRQAFGEPGLGEAMARAGWDSY
LAAYTEEKVVASYRSFFETIVAERSGAVDRG

Sequences:

>Translated_351_residues
MGLRILQVMAGAEQGGAELFFERLCIALHRAGLHQHVVMREASVRLARMREAGLRPVLLPFGGRFDFKTGRALRQEIARF
QPAVVLSWMNRATRFVRPGNHVFCARLGGYYDLKYYRGCDWLVCNTEDIRDYVIKQGFPAERAVHLPNFVPQQHMAPTAR
KLLYTPENAPLVLALGRLHENKAFDVLLRALALVPDVYLWLAGEGPLRASLETLAQDLGVKPRVRFLGWRDDTPALYAAA
DLVVFPSRHEPLGNVVLEAWAQRTPMVSTRTDGPARLITSGHNGLLVPIDDHRAMAGAIRQAFGEPGLGEAMARAGWDSY
LAAYTEEKVVASYRSFFETIVAERSGAVDRG
>Mature_350_residues
GLRILQVMAGAEQGGAELFFERLCIALHRAGLHQHVVMREASVRLARMREAGLRPVLLPFGGRFDFKTGRALRQEIARFQ
PAVVLSWMNRATRFVRPGNHVFCARLGGYYDLKYYRGCDWLVCNTEDIRDYVIKQGFPAERAVHLPNFVPQQHMAPTARK
LLYTPENAPLVLALGRLHENKAFDVLLRALALVPDVYLWLAGEGPLRASLETLAQDLGVKPRVRFLGWRDDTPALYAAAD
LVVFPSRHEPLGNVVLEAWAQRTPMVSTRTDGPARLITSGHNGLLVPIDDHRAMAGAIRQAFGEPGLGEAMARAGWDSYL
AAYTEEKVVASYRSFFETIVAERSGAVDRG

Specific function: Involved In The Addition Of The First Glucose Residue To The Lipopolysaccharide Core. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 39129; Mature: 38998

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLRILQVMAGAEQGGAELFFERLCIALHRAGLHQHVVMREASVRLARMREAGLRPVLLP
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
FGGRFDFKTGRALRQEIARFQPAVVLSWMNRATRFVRPGNHVFCARLGGYYDLKYYRGCD
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEHEECCCC
WLVCNTEDIRDYVIKQGFPAERAVHLPNFVPQQHMAPTARKLLYTPENAPLVLALGRLHE
EEEECHHHHHHHHHHCCCCHHHEECCCCCCCHHHCCHHHHHEEECCCCCCEEEEECHHCC
NKAFDVLLRALALVPDVYLWLAGEGPLRASLETLAQDLGVKPRVRFLGWRDDTPALYAAA
CHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHEEEE
DLVVFPSRHEPLGNVVLEAWAQRTPMVSTRTDGPARLITSGHNGLLVPIDDHRAMAGAIR
EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCEEEEEECCCHHHHHHHH
QAFGEPGLGEAMARAGWDSYLAAYTEEKVVASYRSFFETIVAERSGAVDRG
HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GLRILQVMAGAEQGGAELFFERLCIALHRAGLHQHVVMREASVRLARMREAGLRPVLLP
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
FGGRFDFKTGRALRQEIARFQPAVVLSWMNRATRFVRPGNHVFCARLGGYYDLKYYRGCD
CCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEHEECCCC
WLVCNTEDIRDYVIKQGFPAERAVHLPNFVPQQHMAPTARKLLYTPENAPLVLALGRLHE
EEEECHHHHHHHHHHCCCCHHHEECCCCCCCHHHCCHHHHHEEECCCCCCEEEEECHHCC
NKAFDVLLRALALVPDVYLWLAGEGPLRASLETLAQDLGVKPRVRFLGWRDDTPALYAAA
CHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHEEEE
DLVVFPSRHEPLGNVVLEAWAQRTPMVSTRTDGPARLITSGHNGLLVPIDDHRAMAGAIR
EEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCEEEEECCCCEEEEEECCCHHHHHHHH
QAFGEPGLGEAMARAGWDSYLAAYTEEKVVASYRSFFETIVAERSGAVDRG
HHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Hexosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157937; 11481430 [H]