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The map label for this gene is ycaN [H]

Identifier: 83594207

GI number: 83594207

Start: 3311896

End: 3312813

Strand: Reverse

Name: ycaN [H]

Synonym: Rru_A2875

Alternate gene names: 83594207

Gene position: 3312813-3311896 (Counterclockwise)

Preceding gene: 83594211

Following gene: 83594205

Centisome position: 76.11

GC content: 68.63

Gene sequence:

>918_bases
ATGGCCGAGGCGGACCTTCATGATCTGGATGCCTTCGTCGCCGTCGCCCGGGCGCGCAGCTTTCGCGGCGCGGCGACCTT
GCGCGGGGTATCAGCCTCGGCATTAAGCACGGCGCTGCGCCGGTTGGAGGGGCAGCTGGGGGTTCGCCTGCTCAACCGCA
CCACCCGCAGCGTGACGCCGACCGAGGCCGGCCAACGCCTGCTCGACCGGCTTGGTCCGGCCTTTGGCGAGATCGCCGGG
GCGCTCGACGCGGTGGCCAGCCTTGGCGATCAGCCAAGCGGCACGCTGCGGCTGAATGTGCCCTCCATCGTCGCCCGCCA
CGTCCTGCCCGCCATCGCCGCCCGCTTTCTGATCGCCCATCCGGCGATCACCCTGGAGGTGACGACCAACGACAGCTTCA
TCGATGTGCTGGCCGCCGGCTTCGACGCCGGCATCCGCTATGACGAGCGGATCGAGCGCGACATGATCGCCGTCCCCCTC
GGCCCGCGCATCCAGCGCTTCATCGCCGCCGGCGCCCCAAGTTATCTGGCGCGGCGGGGCGTTCCCGCCACCCCGCGCGC
CTTGGTCGACCACGCCTGCATCCGCCACCGCTTCGCCAGTGGCGTTATCCTGCCCTGGGAATTCAGCCACCAAGGGCAGG
TCCTGCGCATCGCGCCAAACGGACCGCTGGTGTCGACGAGCATCGATATCAGCATCGCCGCCGCGATCGCCGGTCTGGGC
CTGATCTATACCTTCGAGGAGTATTTGAGGGCGCCGCTGGCGCGTGGCGAGCTGGTGGCGGTGCTCGCCGACTGGGGACA
AAGCTTCTCCGGCCCCTTCGTCTATTTCCCCAGCCGTCGCCAGATGCCGGCGCCTTTGCGCGCCTTCATCGATTTTCTCA
AGGATGACGCGAGAACCCCGCCATCACCCAGGGCCTAA

Upstream 100 bases:

>100_bases
GGGGGCCTGTGGCCGCGGTCTGGCGGAAAGGAAGTATGGCGGGCGGGACGCTGTGCGATAATCGGCCTTCTTTCGAACGG
GCTGTGCGGGAAAATGAACA

Downstream 100 bases:

>100_bases
AGACCACCACCCCCGGCACGTGGGCGCCGGGGGTGGTCGCAGAGGGGCAGGGGCGCATATTCTGCCCGATCGAAGGTTTG
GTTTGGGTAAAGCCGCTCTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MAEADLHDLDAFVAVARARSFRGAATLRGVSASALSTALRRLEGQLGVRLLNRTTRSVTPTEAGQRLLDRLGPAFGEIAG
ALDAVASLGDQPSGTLRLNVPSIVARHVLPAIAARFLIAHPAITLEVTTNDSFIDVLAAGFDAGIRYDERIERDMIAVPL
GPRIQRFIAAGAPSYLARRGVPATPRALVDHACIRHRFASGVILPWEFSHQGQVLRIAPNGPLVSTSIDISIAAAIAGLG
LIYTFEEYLRAPLARGELVAVLADWGQSFSGPFVYFPSRRQMPAPLRAFIDFLKDDARTPPSPRA

Sequences:

>Translated_305_residues
MAEADLHDLDAFVAVARARSFRGAATLRGVSASALSTALRRLEGQLGVRLLNRTTRSVTPTEAGQRLLDRLGPAFGEIAG
ALDAVASLGDQPSGTLRLNVPSIVARHVLPAIAARFLIAHPAITLEVTTNDSFIDVLAAGFDAGIRYDERIERDMIAVPL
GPRIQRFIAAGAPSYLARRGVPATPRALVDHACIRHRFASGVILPWEFSHQGQVLRIAPNGPLVSTSIDISIAAAIAGLG
LIYTFEEYLRAPLARGELVAVLADWGQSFSGPFVYFPSRRQMPAPLRAFIDFLKDDARTPPSPRA
>Mature_304_residues
AEADLHDLDAFVAVARARSFRGAATLRGVSASALSTALRRLEGQLGVRLLNRTTRSVTPTEAGQRLLDRLGPAFGEIAGA
LDAVASLGDQPSGTLRLNVPSIVARHVLPAIAARFLIAHPAITLEVTTNDSFIDVLAAGFDAGIRYDERIERDMIAVPLG
PRIQRFIAAGAPSYLARRGVPATPRALVDHACIRHRFASGVILPWEFSHQGQVLRIAPNGPLVSTSIDISIAAAIAGLGL
IYTFEEYLRAPLARGELVAVLADWGQSFSGPFVYFPSRRQMPAPLRAFIDFLKDDARTPPSPRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=40, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=38.3050847457627, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1786401, Length=306, Percent_Identity=31.3725490196078, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=31.3793103448276, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=25.8503401360544, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=27.7777777777778, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=27.681660899654, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1786448, Length=299, Percent_Identity=27.4247491638796, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=25.6666666666667, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787601, Length=140, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693105, Length=256, Percent_Identity=27.34375, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788748, Length=118, Percent_Identity=38.135593220339, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790399, Length=140, Percent_Identity=33.5714285714286, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788481, Length=137, Percent_Identity=31.3868613138686, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790208, Length=128, Percent_Identity=34.375, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI157672245, Length=155, Percent_Identity=30.3225806451613, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32742; Mature: 32611

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEADLHDLDAFVAVARARSFRGAATLRGVSASALSTALRRLEGQLGVRLLNRTTRSVTP
CCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAGQRLLDRLGPAFGEIAGALDAVASLGDQPSGTLRLNVPSIVARHVLPAIAARFLIAH
HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
PAITLEVTTNDSFIDVLAAGFDAGIRYDERIERDMIAVPLGPRIQRFIAAGAPSYLARRG
CCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHCEEECCCCHHHHHHHHCCCHHHHHHCC
VPATPRALVDHACIRHRFASGVILPWEFSHQGQVLRIAPNGPLVSTSIDISIAAAIAGLG
CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEEEECCHHHHHHHHHHH
LIYTFEEYLRAPLARGELVAVLADWGQSFSGPFVYFPSRRQMPAPLRAFIDFLKDDARTP
HHHHHHHHHHCCCCCCCEEEHEEHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCC
PSPRA
CCCCC
>Mature Secondary Structure 
AEADLHDLDAFVAVARARSFRGAATLRGVSASALSTALRRLEGQLGVRLLNRTTRSVTP
CCCCHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
TEAGQRLLDRLGPAFGEIAGALDAVASLGDQPSGTLRLNVPSIVARHVLPAIAARFLIAH
HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHC
PAITLEVTTNDSFIDVLAAGFDAGIRYDERIERDMIAVPLGPRIQRFIAAGAPSYLARRG
CCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHCEEECCCCHHHHHHHHCCCHHHHHHCC
VPATPRALVDHACIRHRFASGVILPWEFSHQGQVLRIAPNGPLVSTSIDISIAAAIAGLG
CCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEEEECCHHHHHHHHHHH
LIYTFEEYLRAPLARGELVAVLADWGQSFSGPFVYFPSRRQMPAPLRAFIDFLKDDARTP
HHHHHHHHHHCCCCCCCEEEHEEHHCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCC
PSPRA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]