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The map label for this gene is ycdC [C]

Identifier: 83594195

GI number: 83594195

Start: 3296615

End: 3297265

Strand: Reverse

Name: ycdC [C]

Synonym: Rru_A2863

Alternate gene names: 83594195

Gene position: 3297265-3296615 (Counterclockwise)

Preceding gene: 83594197

Following gene: 83594190

Centisome position: 75.75

GC content: 67.9

Gene sequence:

>651_bases
ATGGAGACCAAGGATCGCATTCTCGAGGCGGCGGCCATCGAATTCGCCGAACGCGGCTTTCACGGCGCCACCATCGCCCT
GATCATCCACCGCGCCGGGGTCAATCAGGCGGCGGTCAATTATCACTTCGGCGGCAAGGCCAAGCTCTATGCCGCGGTCA
TTCGCCGGGCGATGGGGCGGCTGCTCGATCTGCGTGGCGATCCCTTGACCAGTTGGCGCCAGACCGCCGATCCCCTTGAA
GCGTTGGTCCGCGGTATGCTGTCCGAAAACCTGATCGCCAGCGAGGAACGCGATCGCATCCACCGCTTGTTCGTTTGGGA
GGGGCTGCGGGCCAGCGGCGTCGCCGAGGTCGCGCCGGTGGTGATGATGGACCGCCATTTCCGCTCGGTCGCCGCCGTTC
TGGCCGGCGAGATCGGCTGTGGCGAAAGCGATGACGAGGCGATGACCGATGCGATCTGGGTCATCGGTCAATGTCACGCC
TTCGGCCGCGATCGGGCCTTGCGCTCGCATTTGCCCGCCGTGCCGCCGGAGGCCGAGGCGGCCTATTGCGATGCCCTGGT
GTCGCGCCTGCTCCCCCGCATCCGCGCCGGGCTGGCCCTGACCCGCGCCGACCGGGCGGCGGGACGAAAAGTCCCTGGGG
CGGCGGCTTAA

Upstream 100 bases:

>100_bases
GGGCACCCCGGACCATGCAAAGCGATACGCGGTCTGATTTTAAACGATCGTTTGAAATGCTAAGGTGATCGCCTGGACCA
TGGGATAGGAGGCGCCGGGC

Downstream 100 bases:

>100_bases
GGGCGATGCGCGTGAAACAGGGGCTCCGCACATCGCCCTAAGATCGTCATCGTGAAGCAAATCGTCGTCGCGCTCTGGAC
CAAATCGCTCGGGATTTGCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
METKDRILEAAAIEFAERGFHGATIALIIHRAGVNQAAVNYHFGGKAKLYAAVIRRAMGRLLDLRGDPLTSWRQTADPLE
ALVRGMLSENLIASEERDRIHRLFVWEGLRASGVAEVAPVVMMDRHFRSVAAVLAGEIGCGESDDEAMTDAIWVIGQCHA
FGRDRALRSHLPAVPPEAEAAYCDALVSRLLPRIRAGLALTRADRAAGRKVPGAAA

Sequences:

>Translated_216_residues
METKDRILEAAAIEFAERGFHGATIALIIHRAGVNQAAVNYHFGGKAKLYAAVIRRAMGRLLDLRGDPLTSWRQTADPLE
ALVRGMLSENLIASEERDRIHRLFVWEGLRASGVAEVAPVVMMDRHFRSVAAVLAGEIGCGESDDEAMTDAIWVIGQCHA
FGRDRALRSHLPAVPPEAEAAYCDALVSRLLPRIRAGLALTRADRAAGRKVPGAAA
>Mature_216_residues
METKDRILEAAAIEFAERGFHGATIALIIHRAGVNQAAVNYHFGGKAKLYAAVIRRAMGRLLDLRGDPLTSWRQTADPLE
ALVRGMLSENLIASEERDRIHRLFVWEGLRASGVAEVAPVVMMDRHFRSVAAVLAGEIGCGESDDEAMTDAIWVIGQCHA
FGRDRALRSHLPAVPPEAEAAYCDALVSRLLPRIRAGLALTRADRAAGRKVPGAAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23412; Mature: 23412

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METKDRILEAAAIEFAERGFHGATIALIIHRAGVNQAAVNYHFGGKAKLYAAVIRRAMGR
CCHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCHHEEECCCCCHHHHHHHHHHHHHH
LLDLRGDPLTSWRQTADPLEALVRGMLSENLIASEERDRIHRLFVWEGLRASGVAEVAPV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VMMDRHFRSVAAVLAGEIGCGESDDEAMTDAIWVIGQCHAFGRDRALRSHLPAVPPEAEA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AYCDALVSRLLPRIRAGLALTRADRAAGRKVPGAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
METKDRILEAAAIEFAERGFHGATIALIIHRAGVNQAAVNYHFGGKAKLYAAVIRRAMGR
CCHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCCCHHEEECCCCCHHHHHHHHHHHHHH
LLDLRGDPLTSWRQTADPLEALVRGMLSENLIASEERDRIHRLFVWEGLRASGVAEVAPV
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
VMMDRHFRSVAAVLAGEIGCGESDDEAMTDAIWVIGQCHAFGRDRALRSHLPAVPPEAEA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
AYCDALVSRLLPRIRAGLALTRADRAAGRKVPGAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA