Click here to switch to the map view.

The map label for this gene is ybjZ [C]

Identifier: 83594137

GI number: 83594137

Start: 3236216

End: 3237397

Strand: Reverse

Name: ybjZ [C]

Synonym: Rru_A2805

Alternate gene names: 83594137

Gene position: 3237397-3236216 (Counterclockwise)

Preceding gene: 83594138

Following gene: 83594136

Centisome position: 74.37

GC content: 67.34

Gene sequence:

>1182_bases
ATGGTCGTCGTTAAGCAAAAGGGACGTTGGGCGATGACGCTACGCCTGCTGGTCAAATCGTTGCTCGGCCCGACTAGCAA
GATCGGCGTCGCCCTGGCCTCGCTGGCGGTGGGCGCGGCGGTGGTTTCGGCCCTGACCAGCCTCTATCTCGATATCTCGA
TCAAGATGAGCGAGGAATTGCGCGCCTTCGGCGCCAATTTCATGGTGGCGCCGCTGGCCGGCGAGGCCGAGGCCGGCGCC
CCCCCCACGGTGCGTGGCATGGCCACCGAACGTCTGGAGGCGGCGATCGCCTCGGTGCCCGCCGACCGGCTGGTCGGCGC
CAGCCCCTATCTTTACGGGCTGGTGCGCCTTGATCTGGGCAACGCGGTGATGGTCGGCGTCGATTTCCCCGGCCTGCGCC
GCCTGTCGCCCTATTGGCAGGTCGAGGGATCGTGGATCGGCGTCGCCTTCGATGACCGCAACGCCATGATCGGCCGCCGT
CTGGCCGAGAGCATGGCCCTCAAGGTCGGCGACGGCGTGACACTCTTGAACCGGGCCGAGGGGCAACAGACGCGGGTGAC
GATCAAGGGCATCATCGATGCCGGCGATCAGGAGGACGATCAGATCTTCGTCGCCCTGCCTTTGGCCCAACGCCTGCTTG
GTTTGGCCGGGCGTGCCGATTTCGCCATGCTCAGCGTGGTCGCCCAGGGACCCGAGGCCGATGCCCTGGCGGCGACGATG
ACCCGGGAGTTCCCCGATGTCAGCGCCCGGCCGATCCGCAAGATTTCCCAATCCGATGGCCAGATCCTCGGCAAGATCGA
CGGGCTGATGGCCCTGGTCGCCGCCACCATTCTGGTCATCACCACGCTCTGCGTGAACGCGACCTTGACGGCGATGGTGG
CGCGGCGCACCCCCGAGATCGGCCTGCAAAAGGCGCTGGGCGCCGATAACCGGGCCATCGTCGCCCAGGTGCTGGCCGAG
ACGACGCTGATCTGCCTTGTCGGCGTCGTGCTGGGGTTAGTCATCGGCTATGGCCTAGCCCAAGTTCTCGGCCAGGCGGT
GTTCAATGCCTGGGTGACCTTCCGGCCCGTCGTCATTCCGCTGACCCTGGGGGTGTCGCTGGTCGCCGCCCTGATCGCCG
CCGTTTTGCCGGTGCGCGGCGCCGTGCGCGTGGCCCCGGCCCGCGTGCTGAGAGGAGAATAA

Upstream 100 bases:

>100_bases
AGCGGCCCGCTGGTGGTGCTGGTTTCCATCGCCATGGCCCTGGCCGGATCGGCCCTGCCGGCCCGCGCCATCACCGCCCT
GATGCCCGTCGAGGTGCTTC

Downstream 100 bases:

>100_bases
GCCCATGACCACCATGCCGCCCCGCCCCGACGGCGTCGTTTCCACCGCCCAATCCCCAGCGTCCGCCGATCCACGACCCA
ACGGAGCGCCGGAGGTCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MVVVKQKGRWAMTLRLLVKSLLGPTSKIGVALASLAVGAAVVSALTSLYLDISIKMSEELRAFGANFMVAPLAGEAEAGA
PPTVRGMATERLEAAIASVPADRLVGASPYLYGLVRLDLGNAVMVGVDFPGLRRLSPYWQVEGSWIGVAFDDRNAMIGRR
LAESMALKVGDGVTLLNRAEGQQTRVTIKGIIDAGDQEDDQIFVALPLAQRLLGLAGRADFAMLSVVAQGPEADALAATM
TREFPDVSARPIRKISQSDGQILGKIDGLMALVAATILVITTLCVNATLTAMVARRTPEIGLQKALGADNRAIVAQVLAE
TTLICLVGVVLGLVIGYGLAQVLGQAVFNAWVTFRPVVIPLTLGVSLVAALIAAVLPVRGAVRVAPARVLRGE

Sequences:

>Translated_393_residues
MVVVKQKGRWAMTLRLLVKSLLGPTSKIGVALASLAVGAAVVSALTSLYLDISIKMSEELRAFGANFMVAPLAGEAEAGA
PPTVRGMATERLEAAIASVPADRLVGASPYLYGLVRLDLGNAVMVGVDFPGLRRLSPYWQVEGSWIGVAFDDRNAMIGRR
LAESMALKVGDGVTLLNRAEGQQTRVTIKGIIDAGDQEDDQIFVALPLAQRLLGLAGRADFAMLSVVAQGPEADALAATM
TREFPDVSARPIRKISQSDGQILGKIDGLMALVAATILVITTLCVNATLTAMVARRTPEIGLQKALGADNRAIVAQVLAE
TTLICLVGVVLGLVIGYGLAQVLGQAVFNAWVTFRPVVIPLTLGVSLVAALIAAVLPVRGAVRVAPARVLRGE
>Mature_393_residues
MVVVKQKGRWAMTLRLLVKSLLGPTSKIGVALASLAVGAAVVSALTSLYLDISIKMSEELRAFGANFMVAPLAGEAEAGA
PPTVRGMATERLEAAIASVPADRLVGASPYLYGLVRLDLGNAVMVGVDFPGLRRLSPYWQVEGSWIGVAFDDRNAMIGRR
LAESMALKVGDGVTLLNRAEGQQTRVTIKGIIDAGDQEDDQIFVALPLAQRLLGLAGRADFAMLSVVAQGPEADALAATM
TREFPDVSARPIRKISQSDGQILGKIDGLMALVAATILVITTLCVNATLTAMVARRTPEIGLQKALGADNRAIVAQVLAE
TTLICLVGVVLGLVIGYGLAQVLGQAVFNAWVTFRPVVIPLTLGVSLVAALIAAVLPVRGAVRVAPARVLRGE

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 41160; Mature: 41160

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVVKQKGRWAMTLRLLVKSLLGPTSKIGVALASLAVGAAVVSALTSLYLDISIKMSEEL
CEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHH
RAFGANFMVAPLAGEAEAGAPPTVRGMATERLEAAIASVPADRLVGASPYLYGLVRLDLG
HHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHEEEEEEECC
NAVMVGVDFPGLRRLSPYWQVEGSWIGVAFDDRNAMIGRRLAESMALKVGDGVTLLNRAE
CEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC
GQQTRVTIKGIIDAGDQEDDQIFVALPLAQRLLGLAGRADFAMLSVVAQGPEADALAATM
CCCEEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHH
TREFPDVSARPIRKISQSDGQILGKIDGLMALVAATILVITTLCVNATLTAMVARRTPEI
HHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GLQKALGADNRAIVAQVLAETTLICLVGVVLGLVIGYGLAQVLGQAVFNAWVTFRPVVIP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHH
LTLGVSLVAALIAAVLPVRGAVRVAPARVLRGE
HHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCC
>Mature Secondary Structure
MVVVKQKGRWAMTLRLLVKSLLGPTSKIGVALASLAVGAAVVSALTSLYLDISIKMSEEL
CEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHH
RAFGANFMVAPLAGEAEAGAPPTVRGMATERLEAAIASVPADRLVGASPYLYGLVRLDLG
HHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCHHEEEEEEECC
NAVMVGVDFPGLRRLSPYWQVEGSWIGVAFDDRNAMIGRRLAESMALKVGDGVTLLNRAE
CEEEEEECCCCCCCCCCCEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCC
GQQTRVTIKGIIDAGDQEDDQIFVALPLAQRLLGLAGRADFAMLSVVAQGPEADALAATM
CCCEEEEEEEEECCCCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHH
TREFPDVSARPIRKISQSDGQILGKIDGLMALVAATILVITTLCVNATLTAMVARRTPEI
HHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
GLQKALGADNRAIVAQVLAETTLICLVGVVLGLVIGYGLAQVLGQAVFNAWVTFRPVVIP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHH
LTLGVSLVAALIAAVLPVRGAVRVAPARVLRGE
HHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]