| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is yhjG [C]
Identifier: 83593989
GI number: 83593989
Start: 3084978
End: 3087191
Strand: Reverse
Name: yhjG [C]
Synonym: Rru_A2657
Alternate gene names: 83593989
Gene position: 3087191-3084978 (Counterclockwise)
Preceding gene: 83593990
Following gene: 83593988
Centisome position: 70.92
GC content: 69.02
Gene sequence:
>2214_bases ATGGTGAGGGGTGGAACAATCCTGAAGGTCGTGTTCGGCTTGGCCGTCGTGCTTGTCGTGGCGGTGGTGGTGCTGGTCGC GACCTTCGATCTCAATGCCTATAAGGGGCGCCTTGCCGCCGAGCTTGGCCGGTTGACCGGGCGCGAAGTGACCATCGCCG GCGACATCGGGCTGGCGCTCAGCCTGACGCCGACGATCGCCGTCGAAGGCGTGACCCTGGGCAATGCCGCCTGGGCGGGC AGCGAGCCGATGGTCGCCGTCGATCGCCTGGAAGCCAAGATCGCGGTGGTGCCGCTGCTTTCGGGGATCGTTAGCATCGA TAGCCTGGAGCTTGACGCGCCGCGCATTCTTCTGGCGACCAATGCGGCGGGCCAGGGCAACTGGGCCCTAACCCCGGCGG CCAAGCCGGCGGCGCAGACGCCGCCCGCCGCGTCCAAATCCGAACCGACGCCCGAACCGACGCCCGATCCGGCCGCGGCC CAATCGACGGCGGCGGCCCCGGTGTCGTTTGATATCCGCTCCGTGACGATCACCGACGCCCTGCTGACCTATAAGGACGG CAAGGCCGGTGGCCCGCCAACGACCCTGACCCTGAAATCCCTGACCCTGCTTTCCGAAGGCGCTGGTCAACCCCTTGATG TCGATCTGCAAGGGGCCTTGGGCGCGCGCCTGCTGGGGCTCTCGGGTAAGCTGGGGGCGATCGATACCATCCTGGCCGGA CAGCCGATGGCCGTTGATCTGGCCTTCGAGACCGATGGTCTGAGCGGTACGGTGAAGGGGAGCGTCGCCGAGCCGCTCAA GGGCAAGGGCCTGGATCTGGCGGTGGTGGCCAGGGCGGCCGATCTCAGCGATCTGGCCGGCAATAGCGTGGCCGCGCTGC CCCTTGATCTGTCGACGCGGATCACCCAGGACGGCGCGGCCTATCGCCTGGGCGATCTGGCCCTGCGCCTGGGGGCGAGT TCCGTGAGCGGGGCGCTGCGCATCGATCCGGCGGCCAAGCCGCTGGCGGTGACCGGCGTTCTTGCTGCGCCGTTGCTTGA TCTGGCCGAGCTTTTGCCCAAGCGCCCGGCCCTGTCGGGCGGTGGCGGCGGGGCGGGCGCCCCGGGGACTTCTTCGGGGC GGGCCGCCACGGTCATTCCCGATACGCCGATCGATGTGTCGGCCCTGGTCGGGCTGCCGTTGCGCGCCGATGTGCCGATC ACCATCGACAAGCTGGTGTTGCCCAATGGCATCGTGCTTGACAAGGTGGCCCTGAGGGCCCGGGTGGCGCCCGGCAAGAT CGGTCCGGCCGATTTCTCGACCGCCCTGGGCGGCGGCGTCCTTGCCGGGGTGGTCAGCCTGGATGCGGCGGGGGCGGCGC CCTCCCTGGCCCTGAGCCTGAAAGGCGAGCGCATCGTTCTTGGCGCCCTGGCCCGCGACCTTGGCAAGTCGGATCTGGTG GAAGAGGCGCCCTTGCGGCTGTCGGTCGATTTGGCGGGAAGCGGCGCCTCGCCCCATGCCATCGCCCAAAGGCTGAACGG AACGATCCTGCTTGATGTCGGTCCGGGCAGGATCAACAACGCCCTGGTCGATCTGATCGGCGGCGACGTGCTCAGTCAGG TCAACGGCCTGATCAACCCCTTCGCCGCCAAGCAATCGACCACCGGCCTGCGCTGCGCCGTGTTCAATGTTCCAGTCAAG GCCGGGGTCCTAACCTGGGATCGCCACTTGGCGCTGGAAACCGACCGCATGACGGTGGCGAGCACCGGCAGCGTCGCCCT TGGCCCGGAAACCCTGGATGTCGGGGTGCGTCCCCGTCCCCGGGACGGGGTTGGCTTGGAAACCGGCCTGGGCCGGATCA CCCAGCTTTTCCGGGTCAGCGGAACCTTCGCCAAGCCCTATGTCGATGTCGATGTCGCCCAGGCCCTGACCCAGGCGGTG GGGACGGCGGCTTCGTTGGGGGCGGCGGCGGCGACCATGGGCGGATCGGTGGCCCTCGGTCAGATCGCCGGCAGCCTGCT TGGCGTCGAGGAGGACGACCCGGCGCCCTGCCTGACCGCTCTCGGCCAGAAGGCTCCGCCCAAGGCGGCCTCCCAGGCGA CGCCCGGCACGCCGGCCGAAGCCCTGCGCGGCGTGCTTGACTCGGTGATCGGCAAGGGGGAGAGCGGGGAGGGCACGACC CAGCCAGCGGAAACCCTGAAGAACACGCTGGACGGATTGTTCAAGAGGCAGTAA
Upstream 100 bases:
>100_bases GCGACCCTGATCGTTCAGGAGTTCGGTCAGGTCGCGGCGGCGCTCGACACCTGTTGGGAAGGAGCGACCCTGCCCGCGGC CTCCTGAACAAGGAGTATCC
Downstream 100 bases:
>100_bases CCGCCTGCGGGCAAGACCTTATACCCGGCATCCGTCGCCGCCGCGCCACGGATGCCGGCCCTTTTTTATCCTGACCACGA TGTCTCGGAGAGTACCGATG
Product: AsmA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MVRGGTILKVVFGLAVVLVVAVVVLVATFDLNAYKGRLAAELGRLTGREVTIAGDIGLALSLTPTIAVEGVTLGNAAWAG SEPMVAVDRLEAKIAVVPLLSGIVSIDSLELDAPRILLATNAAGQGNWALTPAAKPAAQTPPAASKSEPTPEPTPDPAAA QSTAAAPVSFDIRSVTITDALLTYKDGKAGGPPTTLTLKSLTLLSEGAGQPLDVDLQGALGARLLGLSGKLGAIDTILAG QPMAVDLAFETDGLSGTVKGSVAEPLKGKGLDLAVVARAADLSDLAGNSVAALPLDLSTRITQDGAAYRLGDLALRLGAS SVSGALRIDPAAKPLAVTGVLAAPLLDLAELLPKRPALSGGGGGAGAPGTSSGRAATVIPDTPIDVSALVGLPLRADVPI TIDKLVLPNGIVLDKVALRARVAPGKIGPADFSTALGGGVLAGVVSLDAAGAAPSLALSLKGERIVLGALARDLGKSDLV EEAPLRLSVDLAGSGASPHAIAQRLNGTILLDVGPGRINNALVDLIGGDVLSQVNGLINPFAAKQSTTGLRCAVFNVPVK AGVLTWDRHLALETDRMTVASTGSVALGPETLDVGVRPRPRDGVGLETGLGRITQLFRVSGTFAKPYVDVDVAQALTQAV GTAASLGAAAATMGGSVALGQIAGSLLGVEEDDPAPCLTALGQKAPPKAASQATPGTPAEALRGVLDSVIGKGESGEGTT QPAETLKNTLDGLFKRQ
Sequences:
>Translated_737_residues MVRGGTILKVVFGLAVVLVVAVVVLVATFDLNAYKGRLAAELGRLTGREVTIAGDIGLALSLTPTIAVEGVTLGNAAWAG SEPMVAVDRLEAKIAVVPLLSGIVSIDSLELDAPRILLATNAAGQGNWALTPAAKPAAQTPPAASKSEPTPEPTPDPAAA QSTAAAPVSFDIRSVTITDALLTYKDGKAGGPPTTLTLKSLTLLSEGAGQPLDVDLQGALGARLLGLSGKLGAIDTILAG QPMAVDLAFETDGLSGTVKGSVAEPLKGKGLDLAVVARAADLSDLAGNSVAALPLDLSTRITQDGAAYRLGDLALRLGAS SVSGALRIDPAAKPLAVTGVLAAPLLDLAELLPKRPALSGGGGGAGAPGTSSGRAATVIPDTPIDVSALVGLPLRADVPI TIDKLVLPNGIVLDKVALRARVAPGKIGPADFSTALGGGVLAGVVSLDAAGAAPSLALSLKGERIVLGALARDLGKSDLV EEAPLRLSVDLAGSGASPHAIAQRLNGTILLDVGPGRINNALVDLIGGDVLSQVNGLINPFAAKQSTTGLRCAVFNVPVK AGVLTWDRHLALETDRMTVASTGSVALGPETLDVGVRPRPRDGVGLETGLGRITQLFRVSGTFAKPYVDVDVAQALTQAV GTAASLGAAAATMGGSVALGQIAGSLLGVEEDDPAPCLTALGQKAPPKAASQATPGTPAEALRGVLDSVIGKGESGEGTT QPAETLKNTLDGLFKRQ >Mature_737_residues MVRGGTILKVVFGLAVVLVVAVVVLVATFDLNAYKGRLAAELGRLTGREVTIAGDIGLALSLTPTIAVEGVTLGNAAWAG SEPMVAVDRLEAKIAVVPLLSGIVSIDSLELDAPRILLATNAAGQGNWALTPAAKPAAQTPPAASKSEPTPEPTPDPAAA QSTAAAPVSFDIRSVTITDALLTYKDGKAGGPPTTLTLKSLTLLSEGAGQPLDVDLQGALGARLLGLSGKLGAIDTILAG QPMAVDLAFETDGLSGTVKGSVAEPLKGKGLDLAVVARAADLSDLAGNSVAALPLDLSTRITQDGAAYRLGDLALRLGAS SVSGALRIDPAAKPLAVTGVLAAPLLDLAELLPKRPALSGGGGGAGAPGTSSGRAATVIPDTPIDVSALVGLPLRADVPI TIDKLVLPNGIVLDKVALRARVAPGKIGPADFSTALGGGVLAGVVSLDAAGAAPSLALSLKGERIVLGALARDLGKSDLV EEAPLRLSVDLAGSGASPHAIAQRLNGTILLDVGPGRINNALVDLIGGDVLSQVNGLINPFAAKQSTTGLRCAVFNVPVK AGVLTWDRHLALETDRMTVASTGSVALGPETLDVGVRPRPRDGVGLETGLGRITQLFRVSGTFAKPYVDVDVAQALTQAV GTAASLGAAAATMGGSVALGQIAGSLLGVEEDDPAPCLTALGQKAPPKAASQATPGTPAEALRGVLDSVIGKGESGEGTT QPAETLKNTLDGLFKRQ
Specific function: Unknown
COG id: COG2982
COG function: function code M; Uncharacterized protein involved in outer membrane biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73564; Mature: 73564
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRGGTILKVVFGLAVVLVVAVVVLVATFDLNAYKGRLAAELGRLTGREVTIAGDIGLAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEE SLTPTIAVEGVTLGNAAWAGSEPMVAVDRLEAKIAVVPLLSGIVSIDSLELDAPRILLAT EECCEEEEECEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEEEE NAAGQGNWALTPAAKPAAQTPPAASKSEPTPEPTPDPAAAQSTAAAPVSFDIRSVTITDA CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE LLTYKDGKAGGPPTTLTLKSLTLLSEGAGQPLDVDLQGALGARLLGLSGKLGAIDTILAG EEEECCCCCCCCCCEEEEHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCC QPMAVDLAFETDGLSGTVKGSVAEPLKGKGLDLAVVARAADLSDLAGNSVAALPLDLSTR CCEEEEEEEECCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHCCCCEEEEEECCHHH ITQDGAAYRLGDLALRLGASSVSGALRIDPAAKPLAVTGVLAAPLLDLAELLPKRPALSG CCCCCCCEEHHHHHHEECCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCC GGGGAGAPGTSSGRAATVIPDTPIDVSALVGLPLRADVPITIDKLVLPNGIVLDKVALRA CCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEHEECCCCEEEHHHHHHE RVAPGKIGPADFSTALGGGVLAGVVSLDAAGAAPSLALSLKGERIVLGALARDLGKSDLV ECCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCHHHHH EEAPLRLSVDLAGSGASPHAIAQRLNGTILLDVGPGRINNALVDLIGGDVLSQVNGLINP HCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC FAAKQSTTGLRCAVFNVPVKAGVLTWDRHLALETDRMTVASTGSVALGPETLDVGVRPRP HHCCCCCCCCEEEEEECCCCCCEEEECCEEEEEECCEEEEECCCEEECCCEEECCCCCCC RDGVGLETGLGRITQLFRVSGTFAKPYVDVDVAQALTQAVGTAASLGAAAATMGGSVALG CCCCCHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHH QIAGSLLGVEEDDPAPCLTALGQKAPPKAASQATPGTPAEALRGVLDSVIGKGESGEGTT HHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC QPAETLKNTLDGLFKRQ CHHHHHHHHHHHHHCCC >Mature Secondary Structure MVRGGTILKVVFGLAVVLVVAVVVLVATFDLNAYKGRLAAELGRLTGREVTIAGDIGLAL CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEE SLTPTIAVEGVTLGNAAWAGSEPMVAVDRLEAKIAVVPLLSGIVSIDSLELDAPRILLAT EECCEEEEECEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCEECCCCEEEEEE NAAGQGNWALTPAAKPAAQTPPAASKSEPTPEPTPDPAAAQSTAAAPVSFDIRSVTITDA CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE LLTYKDGKAGGPPTTLTLKSLTLLSEGAGQPLDVDLQGALGARLLGLSGKLGAIDTILAG EEEECCCCCCCCCCEEEEHHHHHHHCCCCCCEEEEECCCCCEEEECCCCCCCCHHHHHCC QPMAVDLAFETDGLSGTVKGSVAEPLKGKGLDLAVVARAADLSDLAGNSVAALPLDLSTR CCEEEEEEEECCCCCCEECCCCCCCCCCCCCEEEEEEECCCHHHHCCCCEEEEEECCHHH ITQDGAAYRLGDLALRLGASSVSGALRIDPAAKPLAVTGVLAAPLLDLAELLPKRPALSG CCCCCCCEEHHHHHHEECCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCC GGGGAGAPGTSSGRAATVIPDTPIDVSALVGLPLRADVPITIDKLVLPNGIVLDKVALRA CCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCEEEEHEECCCCEEEHHHHHHE RVAPGKIGPADFSTALGGGVLAGVVSLDAAGAAPSLALSLKGERIVLGALARDLGKSDLV ECCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCHHHHH EEAPLRLSVDLAGSGASPHAIAQRLNGTILLDVGPGRINNALVDLIGGDVLSQVNGLINP HCCCCEEEEEECCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC FAAKQSTTGLRCAVFNVPVKAGVLTWDRHLALETDRMTVASTGSVALGPETLDVGVRPRP HHCCCCCCCCEEEEEECCCCCCEEEECCEEEEEECCEEEEECCCEEECCCEEECCCCCCC RDGVGLETGLGRITQLFRVSGTFAKPYVDVDVAQALTQAVGTAASLGAAAATMGGSVALG CCCCCHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHH QIAGSLLGVEEDDPAPCLTALGQKAPPKAASQATPGTPAEALRGVLDSVIGKGESGEGTT HHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC QPAETLKNTLDGLFKRQ CHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA