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The map label for this gene is ybdK [C]

Identifier: 83593797

GI number: 83593797

Start: 2861249

End: 2862418

Strand: Reverse

Name: ybdK [C]

Synonym: Rru_A2462

Alternate gene names: 83593797

Gene position: 2862418-2861249 (Counterclockwise)

Preceding gene: 83593798

Following gene: 83593791

Centisome position: 65.76

GC content: 67.18

Gene sequence:

>1170_bases
ATGCGCGAACCGGCTTTTACGGTGGGGATCGAGGAGGAGTACCTGTTGGTCGATCGCCAGAGCCGGGCTTTGGCCGCCGA
TCCCCCCGAAGCCCTGATGACACGGTTGGCCGCGGCGTTTGGCGATACCAACCACGGCGCGGTCACCCCCGAATTCCTGC
GCGCCCAGATCGAGGTGGGAACCAAGGTTTGCGACAGCCTCGCCGAGGCCGGCGAGGCGCTGGGCGCCCTGCGGCGGGTG
CTGGCCGAGGAGGCGAAGGGCTTCGGTCTCGCCCCGATCGCCGCGTCCACCCATCCCTTCGCCGAATGGGCCGACCTCAA
ACATACGCCCAAGGAGCGCTACGACCTGCTGGCCGAGGACCTGCAGGCGGTGGTCCGCCGGCTGGTGATTTGCGGTATGC
ATGTCCACGTTGGCATCGAGGATCCCGATCTGCGGATGGATCTGATGGCCCAGGTCAGCTATTTCCTGCCCCATCTCTTG
GCTTTGACCACCTCGTCGCCGTTCTGGCGCGGCGAGGACAGCGGGCTGAAATCCTATCGCATCGCCGTGTTCAGCGCCTT
GCCGCGCACCGGCCTGCCCGACAGCTTCAGCTCCTTCGCCGAATACCAGCGCCATGTCGAGGTCCTGGTCAGCGCCGGGC
TGATCGAGGATTCGACGCGCATCTGGTGGGATATCCGCCCCAGCCACCGCTTCCCTACCCTGGAAATGCGCATCGCCGAT
GTCTGCACCCGCCTTGATGACGCGCTGTGCGTCGCGGCGCTGTTTCGCTGTTTGCTGCGCATGCTCTACCGCCTGCGCCG
CGCCAACCAGCGCTGGCGCCACTACGCCCGCTTGCTGATCGCCGAGAACCGCTGGCGGGCCCAACGCTATGGGCTTGATG
GCGGGCTGGTGGATTTCGGACGGGGCGAGGTGGTGCCCTTCGCCGATCTGATCGAGGAACTGCTTGAGCTGATCGCCCCC
GATGCGGCGGTTTTCGGCTGTCAGGCCGAGGTTCTGCACGCCCGGACCATTCTGCACCGGGGTACCAGCGCCCATAATCA
ACTGCGCGTCTTCGCCGAGGCGAGGGCCGGCGGCATGACCCGGGACGAAGCCCTGGTGGCGGTCGTCGATCACCTGATCG
CCCAGACCGTGGCGCCGCTGGGCGCGGATGCCGGGGCTCCGGGGCCTTGA

Upstream 100 bases:

>100_bases
CGAGGTACTGGCCGACGAGGGGCTTTATGTGCGGCGGATGACCTGAGCGGGGTCGGCGTCGCTAGCCTCCGATGGCGCCA
AAACAAAAAAGGAAACGCCC

Downstream 100 bases:

>100_bases
TAAGCAAAAGGCGCCGAAAAACGGCGCCTTGGCAGTGGGATCGCAGGGGGGGGCTTGCTTACCGCGAAGCGGTTCGGGTG
GTGTGGCCCGAGGTCGGGTA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 389

Protein sequence:

>389_residues
MREPAFTVGIEEEYLLVDRQSRALAADPPEALMTRLAAAFGDTNHGAVTPEFLRAQIEVGTKVCDSLAEAGEALGALRRV
LAEEAKGFGLAPIAASTHPFAEWADLKHTPKERYDLLAEDLQAVVRRLVICGMHVHVGIEDPDLRMDLMAQVSYFLPHLL
ALTTSSPFWRGEDSGLKSYRIAVFSALPRTGLPDSFSSFAEYQRHVEVLVSAGLIEDSTRIWWDIRPSHRFPTLEMRIAD
VCTRLDDALCVAALFRCLLRMLYRLRRANQRWRHYARLLIAENRWRAQRYGLDGGLVDFGRGEVVPFADLIEELLELIAP
DAAVFGCQAEVLHARTILHRGTSAHNQLRVFAEARAGGMTRDEALVAVVDHLIAQTVAPLGADAGAPGP

Sequences:

>Translated_389_residues
MREPAFTVGIEEEYLLVDRQSRALAADPPEALMTRLAAAFGDTNHGAVTPEFLRAQIEVGTKVCDSLAEAGEALGALRRV
LAEEAKGFGLAPIAASTHPFAEWADLKHTPKERYDLLAEDLQAVVRRLVICGMHVHVGIEDPDLRMDLMAQVSYFLPHLL
ALTTSSPFWRGEDSGLKSYRIAVFSALPRTGLPDSFSSFAEYQRHVEVLVSAGLIEDSTRIWWDIRPSHRFPTLEMRIAD
VCTRLDDALCVAALFRCLLRMLYRLRRANQRWRHYARLLIAENRWRAQRYGLDGGLVDFGRGEVVPFADLIEELLELIAP
DAAVFGCQAEVLHARTILHRGTSAHNQLRVFAEARAGGMTRDEALVAVVDHLIAQTVAPLGADAGAPGP
>Mature_389_residues
MREPAFTVGIEEEYLLVDRQSRALAADPPEALMTRLAAAFGDTNHGAVTPEFLRAQIEVGTKVCDSLAEAGEALGALRRV
LAEEAKGFGLAPIAASTHPFAEWADLKHTPKERYDLLAEDLQAVVRRLVICGMHVHVGIEDPDLRMDLMAQVSYFLPHLL
ALTTSSPFWRGEDSGLKSYRIAVFSALPRTGLPDSFSSFAEYQRHVEVLVSAGLIEDSTRIWWDIRPSHRFPTLEMRIAD
VCTRLDDALCVAALFRCLLRMLYRLRRANQRWRHYARLLIAENRWRAQRYGLDGGLVDFGRGEVVPFADLIEELLELIAP
DAAVFGCQAEVLHARTILHRGTSAHNQLRVFAEARAGGMTRDEALVAVVDHLIAQTVAPLGADAGAPGP

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=342, Percent_Identity=30.1169590643275, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_RHORT (Q2RRI3)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_427549.1
- ProteinModelPortal:   Q2RRI3
- SMR:   Q2RRI3
- STRING:   Q2RRI3
- GeneID:   3835896
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A2462
- NMPDR:   fig|1085.1.peg.110
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   DKPRFQE
- PhylomeDB:   Q2RRI3
- ProtClustDB:   PRK13515
- BioCyc:   RRUB269796:RRU_A2462-MONOMER
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 43079; Mature: 43079

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREPAFTVGIEEEYLLVDRQSRALAADPPEALMTRLAAAFGDTNHGAVTPEFLRAQIEVG
CCCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
TKVCDSLAEAGEALGALRRVLAEEAKGFGLAPIAASTHPFAEWADLKHTPKERYDLLAED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
LQAVVRRLVICGMHVHVGIEDPDLRMDLMAQVSYFLPHLLALTTSSPFWRGEDSGLKSYR
HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
IAVFSALPRTGLPDSFSSFAEYQRHVEVLVSAGLIEDSTRIWWDIRPSHRFPTLEMRIAD
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCCCHHHHHHHH
VCTRLDDALCVAALFRCLLRMLYRLRRANQRWRHYARLLIAENRWRAQRYGLDGGLVDFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
RGEVVPFADLIEELLELIAPDAAVFGCQAEVLHARTILHRGTSAHNQLRVFAEARAGGMT
CCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
RDEALVAVVDHLIAQTVAPLGADAGAPGP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MREPAFTVGIEEEYLLVDRQSRALAADPPEALMTRLAAAFGDTNHGAVTPEFLRAQIEVG
CCCCCEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
TKVCDSLAEAGEALGALRRVLAEEAKGFGLAPIAASTHPFAEWADLKHTPKERYDLLAED
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHH
LQAVVRRLVICGMHVHVGIEDPDLRMDLMAQVSYFLPHLLALTTSSPFWRGEDSGLKSYR
HHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
IAVFSALPRTGLPDSFSSFAEYQRHVEVLVSAGLIEDSTRIWWDIRPSHRFPTLEMRIAD
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCEECCCEEEEEECCCCCCCHHHHHHHH
VCTRLDDALCVAALFRCLLRMLYRLRRANQRWRHYARLLIAENRWRAQRYGLDGGLVDFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCC
RGEVVPFADLIEELLELIAPDAAVFGCQAEVLHARTILHRGTSAHNQLRVFAEARAGGMT
CCCCCCHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
RDEALVAVVDHLIAQTVAPLGADAGAPGP
HHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA