| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is fct [H]
Identifier: 83593730
GI number: 83593730
Start: 2784559
End: 2786997
Strand: Reverse
Name: fct [H]
Synonym: Rru_A2395
Alternate gene names: 83593730
Gene position: 2786997-2784559 (Counterclockwise)
Preceding gene: 83593731
Following gene: 83593729
Centisome position: 64.03
GC content: 66.09
Gene sequence:
>2439_bases ATGAGGCATGAGGGAAGGGTGGGGCGGACCGGGCGACGGGCCGCCCTGGTGGCCGGGGCGTCGGTCGCGGTCTTGGTGAT GGGAGGGGTGGGGGCCGCCGGCGCGGCGTCAGCGCCGCAGGTTTCGCAAGCGGCGGCGGTGCGGTCGTTTGATATTCCCG CCCAGTCGCTGGCCGGGGCCCTGACCCTGTTTGGCGATCAGGCGGGGGTGCAGATCGCCGCCGAAAGCGCCGTGGTCGCC GGGCGGGCGGCGCCGGCGGTCAGCGGCGCCATGGCGCCCGAGGAGGCGTTGCGCCGATTGCTGGCGGGCAGCGGGCTGCT GTGGCGCTTCACCGATGCGACGACGGTTGTGCTGGAAAAGCCGGCGGCGGCCGGCGGGGTGACCGTGGCCGATCCGGTGA CGGTCGAGGCCGCCCCCTTGCGCCAATCGCCGACCGGGCCGGTCGCCGGTTTCGTCGCCGAACGCTCGATCACGGCGACC AAGACCGATACGCCGATCGTCGAGACTCCGCAGGCGATCGCCGTGGTCACCGCCGATCAGATGGACAAGCGCGCCGTTCA GAACGTCGGTCAGGCGCTTGGCTATGCCGCCGGTGTCGTCGCCCAGCCCAGCGGCGCCGATGCCCGTTACGATGTGCCGC AGATCCGCGGGTTCTCGGTGGCCGAGGGTCAGTATCTGAACGGTCTGCGCATCATGCGCGGCTTCGGCGCGCCGTCGGTC GAGGTCTATGGCCTGGAGCGGATCGAGGCCCTGCGCGGTCCGTCTTCGGTTCTGTATGGGCAGGCGAGCCCGGGCGGCCT GCTCAATATGATCAGCAAGCGCCCGGTCGATGAGGCCTTTGGCGAAATCACCGTCGAGGCCGGCAGCGAAAAGCGCTTCC AGGGCGGCTTCGATCTCGGCGGACCGATCGCCGATGATCTGCCTTTGACCTATCGCCTGACCGGTGTGGTCCGCGACAGC GGCACCCAGATGGATCACATCGACGACGACCGTTATTTCCTGGCGCCGGCGGTGACCTGGAAGAGCGACGATCAGGCGAC GCGGGTCACCTTGCTGACCCAGGTTCAGCACGATCGCTCGGGATCGCCGCTGGGATTGCCGCTGGCTGGAACGCTCTATG ACAATCCCTTGGGCAAGCTGTCGCGCGACCTTTATCTGGGCGAGCCCGATTTCGACGAGTCCGCGCGCACCCAATGGAGC TTGGGCTATGAGGCCGAGCGGCGGGTCAATGATCAGGTGACGCTGCGTCAAAACGCCCGCTACATGGCGCTCGATTGGGA TTACCAGGGCCTGTATTACGCCGGTTTGGCCAGCGACAACCGCACGGCCTATCGCGGGACCTCCTATCAGAACGAGGACC TCGATACCGTCAATGTCGACACCCAGGGCGAGGTGACGCTGGGCACCGGGCCGCTTGCCCATACGGTTCTGGGCGGCGTC GATGTGCGCTATTTCGACGCCCACACCAAGTCGCTGTTTGGCTCGGCGCCGTCGATCGACATCTATAACCCGGTCTATGG TCAGGCGATCGCCGCCCCCACCGGCAGCGCCACCGACAAGACCCAACGGATGACCCAGGTCGGGCTTTATGTCCAAGATC AGATCCGCTGGCACGACTGGCAACTGACCGCCGGCCTGCGCCACGACGTGGCGACCATCCGCACCAAGATCAAAGGTAAG GGCGGCGGCAAGCAGGACGACGCCGCGACCACCGGCCGCGTCGGCCTGTCCTATATCTTCGATTTCGGTCTGGTGCCCTA CCTCAGCTATTCGACCTCGTTCGATCCGCAGACCGGCACGGCGGCCCCGCAACGCGGCGGCGGCAATTTCGATTCCAGCC AAGGGCGCCAGTACGAGGCCGGGATGAAATTCCAGCCCAAGGGCTACAACAGCTTCCTGGCGGCGTCGCTTTTCGATCTG ACCCAGACCAACGTGAAGTCGAGCGACCCGCTCTATAGCGGCTATAGCGTCCAAACCGGCGAGATCACCGTTCAGGGCTT TGAACTCGAAGCCCTGGCCAGCCTCTACGAGGGGCTGAATCTCAGCGCCAGCTACACCCTGCAAGAGGCCGAGATCACCG GCGGGGCGGCCAGCGAAAAGGGCAACCGGCCGGCCAATGTGCCAAGCCAGACGGCCTCGCTGTGGGTGGATTACACCATC CAACCCCAGAGCGCGGTGGGGAAGCTGGGCTTGGCCGGCATCGGCCTGGGCGGCGGCGTGCGCTATGTCGGCGAACGCTA TGGCGACAACGCCAACACCATCAAGCTCGAGTCCAACACGGTTTTCGACGCCGAGATCGGTTACGAGCGCGAAACCTGGA AGGTCGCGCTCAATCTGAACAACCTGACCGATGAGGACACCATCGGCACCTGCACGGCCTTTGGCTGCTACTACGGCGAC GGACGGACCGTCGTCGGTAAACTCACCTATCGCTGGTAA
Upstream 100 bases:
>100_bases GATTTTCTGAAGAATGCTTCGGCTGCGTCGTCTCTTTCCCACAAGCGCATGCGAACAAGTCGCATTATCGCTTTTAGTAT GGGATGGCGAGGGTATCCAA
Downstream 100 bases:
>100_bases GGACCGCCATGGACAAGACCCCGCGGAAATCCTCTGGAGCGCGTCTCTGGTTCCTTGTGCATTCCTGGATGGGATTGCCG TTGTGGGCCTATGTCTTCTT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MRHEGRVGRTGRRAALVAGASVAVLVMGGVGAAGAASAPQVSQAAAVRSFDIPAQSLAGALTLFGDQAGVQIAAESAVVA GRAAPAVSGAMAPEEALRRLLAGSGLLWRFTDATTVVLEKPAAAGGVTVADPVTVEAAPLRQSPTGPVAGFVAERSITAT KTDTPIVETPQAIAVVTADQMDKRAVQNVGQALGYAAGVVAQPSGADARYDVPQIRGFSVAEGQYLNGLRIMRGFGAPSV EVYGLERIEALRGPSSVLYGQASPGGLLNMISKRPVDEAFGEITVEAGSEKRFQGGFDLGGPIADDLPLTYRLTGVVRDS GTQMDHIDDDRYFLAPAVTWKSDDQATRVTLLTQVQHDRSGSPLGLPLAGTLYDNPLGKLSRDLYLGEPDFDESARTQWS LGYEAERRVNDQVTLRQNARYMALDWDYQGLYYAGLASDNRTAYRGTSYQNEDLDTVNVDTQGEVTLGTGPLAHTVLGGV DVRYFDAHTKSLFGSAPSIDIYNPVYGQAIAAPTGSATDKTQRMTQVGLYVQDQIRWHDWQLTAGLRHDVATIRTKIKGK GGGKQDDAATTGRVGLSYIFDFGLVPYLSYSTSFDPQTGTAAPQRGGGNFDSSQGRQYEAGMKFQPKGYNSFLAASLFDL TQTNVKSSDPLYSGYSVQTGEITVQGFELEALASLYEGLNLSASYTLQEAEITGGAASEKGNRPANVPSQTASLWVDYTI QPQSAVGKLGLAGIGLGGGVRYVGERYGDNANTIKLESNTVFDAEIGYERETWKVALNLNNLTDEDTIGTCTAFGCYYGD GRTVVGKLTYRW
Sequences:
>Translated_812_residues MRHEGRVGRTGRRAALVAGASVAVLVMGGVGAAGAASAPQVSQAAAVRSFDIPAQSLAGALTLFGDQAGVQIAAESAVVA GRAAPAVSGAMAPEEALRRLLAGSGLLWRFTDATTVVLEKPAAAGGVTVADPVTVEAAPLRQSPTGPVAGFVAERSITAT KTDTPIVETPQAIAVVTADQMDKRAVQNVGQALGYAAGVVAQPSGADARYDVPQIRGFSVAEGQYLNGLRIMRGFGAPSV EVYGLERIEALRGPSSVLYGQASPGGLLNMISKRPVDEAFGEITVEAGSEKRFQGGFDLGGPIADDLPLTYRLTGVVRDS GTQMDHIDDDRYFLAPAVTWKSDDQATRVTLLTQVQHDRSGSPLGLPLAGTLYDNPLGKLSRDLYLGEPDFDESARTQWS LGYEAERRVNDQVTLRQNARYMALDWDYQGLYYAGLASDNRTAYRGTSYQNEDLDTVNVDTQGEVTLGTGPLAHTVLGGV DVRYFDAHTKSLFGSAPSIDIYNPVYGQAIAAPTGSATDKTQRMTQVGLYVQDQIRWHDWQLTAGLRHDVATIRTKIKGK GGGKQDDAATTGRVGLSYIFDFGLVPYLSYSTSFDPQTGTAAPQRGGGNFDSSQGRQYEAGMKFQPKGYNSFLAASLFDL TQTNVKSSDPLYSGYSVQTGEITVQGFELEALASLYEGLNLSASYTLQEAEITGGAASEKGNRPANVPSQTASLWVDYTI QPQSAVGKLGLAGIGLGGGVRYVGERYGDNANTIKLESNTVFDAEIGYERETWKVALNLNNLTDEDTIGTCTAFGCYYGD GRTVVGKLTYRW >Mature_812_residues MRHEGRVGRTGRRAALVAGASVAVLVMGGVGAAGAASAPQVSQAAAVRSFDIPAQSLAGALTLFGDQAGVQIAAESAVVA GRAAPAVSGAMAPEEALRRLLAGSGLLWRFTDATTVVLEKPAAAGGVTVADPVTVEAAPLRQSPTGPVAGFVAERSITAT KTDTPIVETPQAIAVVTADQMDKRAVQNVGQALGYAAGVVAQPSGADARYDVPQIRGFSVAEGQYLNGLRIMRGFGAPSV EVYGLERIEALRGPSSVLYGQASPGGLLNMISKRPVDEAFGEITVEAGSEKRFQGGFDLGGPIADDLPLTYRLTGVVRDS GTQMDHIDDDRYFLAPAVTWKSDDQATRVTLLTQVQHDRSGSPLGLPLAGTLYDNPLGKLSRDLYLGEPDFDESARTQWS LGYEAERRVNDQVTLRQNARYMALDWDYQGLYYAGLASDNRTAYRGTSYQNEDLDTVNVDTQGEVTLGTGPLAHTVLGGV DVRYFDAHTKSLFGSAPSIDIYNPVYGQAIAAPTGSATDKTQRMTQVGLYVQDQIRWHDWQLTAGLRHDVATIRTKIKGK GGGKQDDAATTGRVGLSYIFDFGLVPYLSYSTSFDPQTGTAAPQRGGGNFDSSQGRQYEAGMKFQPKGYNSFLAASLFDL TQTNVKSSDPLYSGYSVQTGEITVQGFELEALASLYEGLNLSASYTLQEAEITGGAASEKGNRPANVPSQTASLWVDYTI QPQSAVGKLGLAGIGLGGGVRYVGERYGDNANTIKLESNTVFDAEIGYERETWKVALNLNNLTDEDTIGTCTAFGCYYGD GRTVVGKLTYRW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=721, Percent_Identity=38.6962552011096, Blast_Score=405, Evalue=1e-114, Organism=Escherichia coli, GI1787024, Length=762, Percent_Identity=24.5406824146982, Blast_Score=127, Evalue=3e-30, Organism=Escherichia coli, GI1787344, Length=227, Percent_Identity=24.2290748898678, Blast_Score=68, Evalue=3e-12, Organism=Escherichia coli, GI1788478, Length=164, Percent_Identity=28.6585365853659, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 86215; Mature: 86215
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHEGRVGRTGRRAALVAGASVAVLVMGGVGAAGAASAPQVSQAAAVRSFDIPAQSLAGA CCCCCCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCE LTLFGDQAGVQIAAESAVVAGRAAPAVSGAMAPEEALRRLLAGSGLLWRFTDATTVVLEK EEEECCCCCEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEC PAAAGGVTVADPVTVEAAPLRQSPTGPVAGFVAERSITATKTDTPIVETPQAIAVVTADQ CCCCCCEEECCCCEEEECCCCCCCCCCHHHHHCCCEEEECCCCCCCEECCCEEEEEEHHH MDKRAVQNVGQALGYAAGVVAQPSGADARYDVPQIRGFSVAEGQYLNGLRIMRGFGAPSV HHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCE EVYGLERIEALRGPSSVLYGQASPGGLLNMISKRPVDEAFGEITVEAGSEKRFQGGFDLG EEECHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCHHHHCCEEEEECCCCCCCCCCCCCC GPIADDLPLTYRLTGVVRDSGTQMDHIDDDRYFLAPAVTWKSDDQATRVTLLTQVQHDRS CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEHHHCCC GSPLGLPLAGTLYDNPLGKLSRDLYLGEPDFDESARTQWSLGYEAERRVNDQVTLRQNAR CCCCCCCEECCCCCCCHHHHHHHEECCCCCCCCCCCCEEECCCHHHHCCCCEEEEECCCE YMALDWDYQGLYYAGLASDNRTAYRGTSYQNEDLDTVNVDTQGEVTLGTGPLAHTVLGGV EEEEECCCCCEEEEEECCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCHHHHHHCCC DVRYFDAHTKSLFGSAPSIDIYNPVYGQAIAAPTGSATDKTQRMTQVGLYVQDQIRWHDW EEEEEECHHHHHHCCCCCCEECCCCCCCEEECCCCCCCHHHHHHHHHCEEEEECEEEEEE QLTAGLRHDVATIRTKIKGKGGGKQDDAATTGRVGLSYIFDFGLVPYLSYSTSFDPQTGT EEECCCHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCC AAPQRGGGNFDSSQGRQYEAGMKFQPKGYNSFLAASLFDLTQTNVKSSDPLYSGYSVQTG CCCCCCCCCCCCCCCCEECCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECC EITVQGFELEALASLYEGLNLSASYTLQEAEITGGAASEKGNRPANVPSQTASLWVDYTI EEEEEECCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE QPQSAVGKLGLAGIGLGGGVRYVGERYGDNANTIKLESNTVFDAEIGYERETWKVALNLN CCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEC NLTDEDTIGTCTAFGCYYGDGRTVVGKLTYRW CCCCCCCCCEEEEEEEEECCCCEEEEEEEECC >Mature Secondary Structure MRHEGRVGRTGRRAALVAGASVAVLVMGGVGAAGAASAPQVSQAAAVRSFDIPAQSLAGA CCCCCCCCCCCCCEEEEECCEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCHHHHHCE LTLFGDQAGVQIAAESAVVAGRAAPAVSGAMAPEEALRRLLAGSGLLWRFTDATTVVLEK EEEECCCCCEEEEECCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCEEEEEEC PAAAGGVTVADPVTVEAAPLRQSPTGPVAGFVAERSITATKTDTPIVETPQAIAVVTADQ CCCCCCEEECCCCEEEECCCCCCCCCCHHHHHCCCEEEECCCCCCCEECCCEEEEEEHHH MDKRAVQNVGQALGYAAGVVAQPSGADARYDVPQIRGFSVAEGQYLNGLRIMRGFGAPSV HHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCE EVYGLERIEALRGPSSVLYGQASPGGLLNMISKRPVDEAFGEITVEAGSEKRFQGGFDLG EEECHHHHHHHCCCCCEEEECCCCCHHHHHHHCCCHHHHCCEEEEECCCCCCCCCCCCCC GPIADDLPLTYRLTGVVRDSGTQMDHIDDDRYFLAPAVTWKSDDQATRVTLLTQVQHDRS CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEHHHCCC GSPLGLPLAGTLYDNPLGKLSRDLYLGEPDFDESARTQWSLGYEAERRVNDQVTLRQNAR CCCCCCCEECCCCCCCHHHHHHHEECCCCCCCCCCCCEEECCCHHHHCCCCEEEEECCCE YMALDWDYQGLYYAGLASDNRTAYRGTSYQNEDLDTVNVDTQGEVTLGTGPLAHTVLGGV EEEEECCCCCEEEEEECCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCHHHHHHCCC DVRYFDAHTKSLFGSAPSIDIYNPVYGQAIAAPTGSATDKTQRMTQVGLYVQDQIRWHDW EEEEEECHHHHHHCCCCCCEECCCCCCCEEECCCCCCCHHHHHHHHHCEEEEECEEEEEE QLTAGLRHDVATIRTKIKGKGGGKQDDAATTGRVGLSYIFDFGLVPYLSYSTSFDPQTGT EEECCCHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCC AAPQRGGGNFDSSQGRQYEAGMKFQPKGYNSFLAASLFDLTQTNVKSSDPLYSGYSVQTG CCCCCCCCCCCCCCCCEECCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECC EITVQGFELEALASLYEGLNLSASYTLQEAEITGGAASEKGNRPANVPSQTASLWVDYTI EEEEEECCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEE QPQSAVGKLGLAGIGLGGGVRYVGERYGDNANTIKLESNTVFDAEIGYERETWKVALNLN CCHHHHCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCEEEEEECCCCCEEEEEEEEEC NLTDEDTIGTCTAFGCYYGDGRTVVGKLTYRW CCCCCCCCCEEEEEEEEECCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]