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The map label for this gene is lsrB [H]

Identifier: 83593637

GI number: 83593637

Start: 2663888

End: 2664937

Strand: Reverse

Name: lsrB [H]

Synonym: Rru_A2302

Alternate gene names: 83593637

Gene position: 2664937-2663888 (Counterclockwise)

Preceding gene: 83593638

Following gene: 83593636

Centisome position: 61.22

GC content: 62.48

Gene sequence:

>1050_bases
ATGAAGAAGTTCCTATCGTCCCTGGTGCTCGCGGCGTCGCTTGTCGCCGGTCCGGCCCTGGCCGCCGATGCGCCGGTCGA
TGTCTCGCAGGTGCCCAAGGGCTTTTCCGCCAAAGACGTTGGCAAAAGCTATTCCATCGCCACCGTGGTCAAGGTCGATG
GCATCGCCTGGTTTGACCGCATGCGCGAAGGCGCCAAGCAGTTCGGCGCCGATACCGGCCATGACACCTGGATGGTCGGG
CCCAGTCAGGCCGACGCCGCCGCCCAGGTGCAACTGGTCGAGAACCTGATCGCCCAGGGCGTCGACGCCATCTGCGTCGT
GCCCTTCTCGGTCGAGGCCCTGGAGCCCGTGCTCAAGAAGGCGCGCGATCGCGGCATCGTCGTCATCGCCCACGAGGCCT
CGAACATCACCAACGCGGATTTCGTGCTCGAAGCCTTCGACAACCTCGCCTATGGCGCCAAGCTGATGGAAGTGCTGGGC
ACCTATATGAAGGGCGAAGGCAAGTATGTGACGACGGTCGGCAGCCTGACCTCGAAGTCTCAGAACGAATGGATCGACGG
CGCCATCGCCTATCAGAAGGCCCATTTCCCCAAGATGGAGCAGGCGACCGGCCGGCTCGAGACCTATGACGACGCCAATA
CCGACTACAACAAGCTCAAGGAAGTGCTGACCACCTATCCCGATATCAAGGGCATCCTTGGTGGTCCGATGCCGACCTCG
GCCGGCGCCGGTCGCCTGATTTCGGAACGCGGCCTGAAGGACAAGCTGTTCTTCGCTGGCACCGGTCTGGTTTCGGTCGC
GGGCGAATATTTGTCCAAGGGCGATATCCAGTACATCCAGTTCTGGGATCCGGCGGTGGCCGCCTATGCGATGAACATCG
TCGCGGTGATGGCCCTTGACGGCAAGGCCGATCAGATCAAGGCCGGCCTCAATCTGGGCCTGCCCGGCTACACCAGCCTG
ACCGCCCCGGTGGCGGGCAAGGACAAGCTGCTCTATGGCGCGGGCTGGGTCGGCGTGACCAAGGACAACATGGAAGACTA
CAACTTCTAA

Upstream 100 bases:

>100_bases
GCGCGACACGGCGGATCGGGGGGCTGGGTCGCGTGGCGCCCTTCGCCAAAAAAACAAAAAAACGAAGGCGTTTCCCGAAA
GACTGTTCAGGAGGTCCAAG

Downstream 100 bases:

>100_bases
GTCCGCAGCCCCTGCTCCTTCGCTTTCGGCCCCGGGGCGGGAGCGCTTTGCCATCGGCAAGGCTCTCGCCCCGGCTTTCC
TCCCCCGCCGGATGTCGTCA

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKKFLSSLVLAASLVAGPALAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDRMREGAKQFGADTGHDTWMVG
PSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKKARDRGIVVIAHEASNITNADFVLEAFDNLAYGAKLMEVLG
TYMKGEGKYVTTVGSLTSKSQNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVLTTYPDIKGILGGPMPTS
AGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYAMNIVAVMALDGKADQIKAGLNLGLPGYTSL
TAPVAGKDKLLYGAGWVGVTKDNMEDYNF

Sequences:

>Translated_349_residues
MKKFLSSLVLAASLVAGPALAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDRMREGAKQFGADTGHDTWMVG
PSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKKARDRGIVVIAHEASNITNADFVLEAFDNLAYGAKLMEVLG
TYMKGEGKYVTTVGSLTSKSQNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVLTTYPDIKGILGGPMPTS
AGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYAMNIVAVMALDGKADQIKAGLNLGLPGYTSL
TAPVAGKDKLLYGAGWVGVTKDNMEDYNF
>Mature_349_residues
MKKFLSSLVLAASLVAGPALAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDRMREGAKQFGADTGHDTWMVG
PSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKKARDRGIVVIAHEASNITNADFVLEAFDNLAYGAKLMEVLG
TYMKGEGKYVTTVGSLTSKSQNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVLTTYPDIKGILGGPMPTS
AGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYAMNIVAVMALDGKADQIKAGLNLGLPGYTSL
TAPVAGKDKLLYGAGWVGVTKDNMEDYNF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=247, Percent_Identity=26.3157894736842, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37153; Mature: 37153

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLSSLVLAASLVAGPALAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDR
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
MREGAKQFGADTGHDTWMVGPSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKK
HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
ARDRGIVVIAHEASNITNADFVLEAFDNLAYGAKLMEVLGTYMKGEGKYVTTVGSLTSKS
HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCC
QNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVLTTYPDIKGILGGPMPTS
CCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCC
AGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYAMNIVAVMALD
CCCCCHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHEEEEC
GKADQIKAGLNLGLPGYTSLTAPVAGKDKLLYGAGWVGVTKDNMEDYNF
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCC
>Mature Secondary Structure
MKKFLSSLVLAASLVAGPALAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDR
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHCCCCCCEEEEEEECCHHHHHH
MREGAKQFGADTGHDTWMVGPSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKK
HHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
ARDRGIVVIAHEASNITNADFVLEAFDNLAYGAKLMEVLGTYMKGEGKYVTTVGSLTSKS
HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHCCC
QNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVLTTYPDIKGILGGPMPTS
CCCCCCHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHCCCCCCCC
AGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYAMNIVAVMALD
CCCCCHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHEEEEC
GKADQIKAGLNLGLPGYTSLTAPVAGKDKLLYGAGWVGVTKDNMEDYNF
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA