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The map label for this gene is deoC

Identifier: 83593638

GI number: 83593638

Start: 2665082

End: 2665798

Strand: Reverse

Name: deoC

Synonym: Rru_A2303

Alternate gene names: 83593638

Gene position: 2665798-2665082 (Counterclockwise)

Preceding gene: 83593641

Following gene: 83593637

Centisome position: 61.24

GC content: 68.48

Gene sequence:

>717_bases
ATGACCGAACCGACCAACACGCTACCGAACCTGGGAGCGGCGGAACTTGCGGCTTATATCGACCACACCCTGCTGCGTCC
CGACGCCGGGGCGGCCGAGATCGCCGCTTGGTGCGACGAGGCGGTGACCCATGGTTTCAAGTCGGTTTGCGTCAATCCCA
TCCAGATCCCCCTGGTCGCGGCCAAGCTGGCCGGAACCGGCGTTGGCGTTTGCTCGGTGATCGGCTTTCCCTTCGGCGCC
AGTCCCACCGCCGTGAAGGTTGCGGAAGCCGCCTGGGTGGTGGCCCATGGGGCGACCGAGGTGGATATGGTCATCGATAT
CGGCGCCCTGAAGGACGGGCGGGCCGAGGCGGTGCGGGACGATATCGCCGCGGTCAAGGCCGCTTGCGGCAAGGCCCTGC
TCAAGGTCATCATCGAGGCCTGTTTGCTCGACGATGAGCAAAAGGCTCTGGCTTGCCGGCTCAGCGCCGAGGCCGGGGCC
GATTTCGTCAAGACCTCGACCGGCTTCGCCGGTGGCGGGGCCACGGCGAAGGATGTGGCCCTGATGCGCCGGACCGTCGG
CTCGGCGCTGGGGGTGAAGGCCTCGGGTGGCGTGCGCACGCGCGATGACGCGCTGCGCATGATCGCCGCCGGGGCATCGA
GGATCGGAGCCAGCGCCAGCATCGCCATCGTGGCCGAAGCCGACGCGGCGTCGACCGGCGCGAAGGGGGGCTACTAA

Upstream 100 bases:

>100_bases
TTGACGCCGGAAGCGTCAACATGAAACACTTCGAACACGCGATGTTATGATATTAACATGATCGTGCAATTTGTGCGGCG
ATCGTGCAGGAGATGCAGGG

Downstream 100 bases:

>100_bases
CCCCCGGCCCCTCCGATCGGGTCGCGCTTTCCGGGGACCGGCAAGCGCGACACGGCGGATCGGGGGGCTGGGTCGCGTGG
CGCCCTTCGCCAAAAAAACA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTEPTNTLPNLGAAELAAYIDHTLLRPDAGAAEIAAWCDEAVTHGFKSVCVNPIQIPLVAAKLAGTGVGVCSVIGFPFGA
SPTAVKVAEAAWVVAHGATEVDMVIDIGALKDGRAEAVRDDIAAVKAACGKALLKVIIEACLLDDEQKALACRLSAEAGA
DFVKTSTGFAGGGATAKDVALMRRTVGSALGVKASGGVRTRDDALRMIAAGASRIGASASIAIVAEADAASTGAKGGY

Sequences:

>Translated_238_residues
MTEPTNTLPNLGAAELAAYIDHTLLRPDAGAAEIAAWCDEAVTHGFKSVCVNPIQIPLVAAKLAGTGVGVCSVIGFPFGA
SPTAVKVAEAAWVVAHGATEVDMVIDIGALKDGRAEAVRDDIAAVKAACGKALLKVIIEACLLDDEQKALACRLSAEAGA
DFVKTSTGFAGGGATAKDVALMRRTVGSALGVKASGGVRTRDDALRMIAAGASRIGASASIAIVAEADAASTGAKGGY
>Mature_237_residues
TEPTNTLPNLGAAELAAYIDHTLLRPDAGAAEIAAWCDEAVTHGFKSVCVNPIQIPLVAAKLAGTGVGVCSVIGFPFGAS
PTAVKVAEAAWVVAHGATEVDMVIDIGALKDGRAEAVRDDIAAVKAACGKALLKVIIEACLLDDEQKALACRLSAEAGAD
FVKTSTGFAGGGATAKDVALMRRTVGSALGVKASGGVRTRDDALRMIAAGASRIGASASIAIVAEADAASTGAKGGY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=181, Percent_Identity=34.2541436464088, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI1790841, Length=227, Percent_Identity=33.4801762114537, Blast_Score=86, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=214, Percent_Identity=35.5140186915888, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_RHORT (Q2RRZ2)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_427390.1
- ProteinModelPortal:   Q2RRZ2
- SMR:   Q2RRZ2
- STRING:   Q2RRZ2
- GeneID:   3835731
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A2303
- NMPDR:   fig|1085.1.peg.3779
- eggNOG:   COG0274
- HOGENOM:   HBG636421
- OMA:   GANTPEV
- PhylomeDB:   Q2RRZ2
- ProtClustDB:   CLSK2773246
- BioCyc:   RRUB269796:RRU_A2303-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 23774; Mature: 23643

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: ACT_SITE 164-164 ACT_SITE 193-193

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPTNTLPNLGAAELAAYIDHTLLRPDAGAAEIAAWCDEAVTHGFKSVCVNPIQIPLVA
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AKLAGTGVGVCSVIGFPFGASPTAVKVAEAAWVVAHGATEVDMVIDIGALKDGRAEAVRD
HHHHCCCCHHHHHHCCCCCCCCCCEEHHHHEEEEECCCCCEEEEEEECCCCCCHHHHHHH
DIAAVKAACGKALLKVIIEACLLDDEQKALACRLSAEAGADFVKTSTGFAGGGATAKDVA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECHHCCCCHHCCCCCCCCCCCHHHHHH
LMRRTVGSALGVKASGGVRTRDDALRMIAAGASRIGASASIAIVAEADAASTGAKGGY
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
TEPTNTLPNLGAAELAAYIDHTLLRPDAGAAEIAAWCDEAVTHGFKSVCVNPIQIPLVA
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AKLAGTGVGVCSVIGFPFGASPTAVKVAEAAWVVAHGATEVDMVIDIGALKDGRAEAVRD
HHHHCCCCHHHHHHCCCCCCCCCCEEHHHHEEEEECCCCCEEEEEEECCCCCCHHHHHHH
DIAAVKAACGKALLKVIIEACLLDDEQKALACRLSAEAGADFVKTSTGFAGGGATAKDVA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECHHCCCCHHCCCCCCCCCCCHHHHHH
LMRRTVGSALGVKASGGVRTRDDALRMIAAGASRIGASASIAIVAEADAASTGAKGGY
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA