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The map label for this gene is ydfI [H]

Identifier: 83593567

GI number: 83593567

Start: 2591508

End: 2592146

Strand: Reverse

Name: ydfI [H]

Synonym: Rru_A2232

Alternate gene names: 83593567

Gene position: 2592146-2591508 (Counterclockwise)

Preceding gene: 83593569

Following gene: 83593566

Centisome position: 59.55

GC content: 60.56

Gene sequence:

>639_bases
ATGCGCGTTATGATTGTAGACGATCACGAATTGTTCCGTAACGGTTTAAGGTTTCAGCTTGCCGCCATCGATTCGACACT
GGATGTCGTGGAAGCCGATACCTTCGAGGACTGCATCCGTTTGGCCACGGAAGATGGCCCGGTGAGCAAGGTGTTCCTTG
ACCTGATGATGCCCGACATGGATTGGCGCGAGGCGCTTTCGGCGCTGCGTCGCCTGCCCGATCCCCCCGATGTGGTGGTG
TTGTCGGGTGCCGACGACGTGGCGATGATCCGTTCGGCCATCGACCATGGGGCTTGCGGATATATTCCCAAAAGTCTGAA
GGGCGATGTTCTGGAAAGCGCCCTGCGGCTGATTCTCGCCGGGGGGTTCTATATCACTCCCGAGGTGTATCGCGGACCGC
GGGTTTATGATGGCGCCGTGCGCATCATGGGTGTCGGCGGCGATGACGTTCCGCTGACCCCGCGTCAGAAGGAGGTTCTC
GCCCATATCGACGCCGGCCTGTCCAATCGCCAGATCGCCCAGGCGATGACGCTGTCCGAAGCGACGGTGAAGATGCATAT
CGGCCGTTTGTTCAAGGCCTTGGGCGCCCAAAGCCGCACCGATGCCCTAGCCGTCGCCCGCCGCAAGGGTATGCTGTAG

Upstream 100 bases:

>100_bases
GGCGAACTGATCATGGGTCAGCGGCGGGGAACGCGGCGGAAGGCCCTCTGCCCGAGAGAGACGGCAGGTGGGTTGGGAAG
CAGAGAAGGGAAAGCGCACC

Downstream 100 bases:

>100_bases
ATCAAGCTGCGCTAAAGGAGCCTTTTAGCGCACAAGCTTTGCTCGACAGTCCCCTGTTCGGTCCGGGGCAACGAAAAAAA
CCGGCACTCCTCTTTCTCCG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSKVFLDLMMPDMDWREALSALRRLPDPPDVVV
LSGADDVAMIRSAIDHGACGYIPKSLKGDVLESALRLILAGGFYITPEVYRGPRVYDGAVRIMGVGGDDVPLTPRQKEVL
AHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKGML

Sequences:

>Translated_212_residues
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSKVFLDLMMPDMDWREALSALRRLPDPPDVVV
LSGADDVAMIRSAIDHGACGYIPKSLKGDVLESALRLILAGGFYITPEVYRGPRVYDGAVRIMGVGGDDVPLTPRQKEVL
AHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKGML
>Mature_212_residues
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSKVFLDLMMPDMDWREALSALRRLPDPPDVVV
LSGADDVAMIRSAIDHGACGYIPKSLKGDVLESALRLILAGGFYITPEVYRGPRVYDGAVRIMGVGGDDVPLTPRQKEVL
AHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRTDALAVARRKGML

Specific function: Member of the two-component regulatory system ydfH/ydfI. Regulates the transcription of ydfJ by binding to its promoter region [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=206, Percent_Identity=35.4368932038835, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790102, Length=209, Percent_Identity=29.1866028708134, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787473, Length=205, Percent_Identity=31.219512195122, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788222, Length=211, Percent_Identity=24.6445497630332, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786747, Length=206, Percent_Identity=24.2718446601942, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23176; Mature: 23176

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSKVFLDLMMPDM
CEEEEECCHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCC
DWREALSALRRLPDPPDVVVLSGADDVAMIRSAIDHGACGYIPKSLKGDVLESALRLILA
CHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
GGFYITPEVYRGPRVYDGAVRIMGVGGDDVPLTPRQKEVLAHIDAGLSNRQIAQAMTLSE
CCEEECHHHHCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
ATVKMHIGRLFKALGAQSRTDALAVARRKGML
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSKVFLDLMMPDM
CEEEEECCHHHHHCCCEEEEEECCCHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCC
DWREALSALRRLPDPPDVVVLSGADDVAMIRSAIDHGACGYIPKSLKGDVLESALRLILA
CHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
GGFYITPEVYRGPRVYDGAVRIMGVGGDDVPLTPRQKEVLAHIDAGLSNRQIAQAMTLSE
CCEEECHHHHCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
ATVKMHIGRLFKALGAQSRTDALAVARRKGML
HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]