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The map label for this gene is ycbL [H]

Identifier: 83593569

GI number: 83593569

Start: 2593441

End: 2593833

Strand: Reverse

Name: ycbL [H]

Synonym: Rru_A2234

Alternate gene names: 83593569

Gene position: 2593833-2593441 (Counterclockwise)

Preceding gene: 83593570

Following gene: 83593567

Centisome position: 59.59

GC content: 59.8

Gene sequence:

>393_bases
ATGCCGAACGGGAAGACAGTCCTGATTGTCGACGATGATACGAATGTCAGGAAAGCCATCCGTCTGGGGGTGGAGGAATT
GGGTTGGGCCGTCGTGGAAGCTTGCGACGGAGAAGAAGGTCTGCGCCTTCTCGGCGAGAGGATGTTCGATCTGGTTGTTT
CGGATGTGTGGATGCCCAAGGTCGACGGCATCAGTTTCCTGAAGCACGCCATGGAAATCCGCCCGGGGCTGAAGGTTCTG
TCGGTCTCGGGCGGCGGGACCGCCCCGGCGGCGCTGAGCCTGAAGATGACCGAGATGTATGGCGCCTCGGACATCTTGTT
CAAGCCCTTCACCCCCAACGAACTGCTCGGCAAGTTAAGCGCCCTGATGGCCGACGAGCCCGCCCTTGATTAA

Upstream 100 bases:

>100_bases
GCCTGGGGGGGTACGATCGGGCTTGAAAGCGCTCCGGGATCGGGTACAAAATTCGTAATATCCTTCCCCATTAACAATCC
CTGAAAGCGGAAGAGGAATC

Downstream 100 bases:

>100_bases
CCGGGCGGTCGCGCCCCGGGGCCTTTGATCGGGGACGGCCGATAAGAACGGGCGGCGAGCGGAAAAACCGGAATTGGCTT
TTCCACTCGCCGCTCTAACA

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MPNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFDLVVSDVWMPKVDGISFLKHAMEIRPGLKVL
SVSGGGTAPAALSLKMTEMYGASDILFKPFTPNELLGKLSALMADEPALD

Sequences:

>Translated_130_residues
MPNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFDLVVSDVWMPKVDGISFLKHAMEIRPGLKVL
SVSGGGTAPAALSLKMTEMYGASDILFKPFTPNELLGKLSALMADEPALD
>Mature_129_residues
PNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFDLVVSDVWMPKVDGISFLKHAMEIRPGLKVLS
VSGGGTAPAALSLKMTEMYGASDILFKPFTPNELLGKLSALMADEPALD

Specific function: Member of the two-component regulatory system ycbM/ycbL [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788905, Length=125, Percent_Identity=32.8, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 14003; Mature: 13871

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFDLVVSDVWMPK
CCCCCEEEEEECCCCHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
VDGISFLKHAMEIRPGLKVLSVSGGGTAPAALSLKMTEMYGASDILFKPFTPNELLGKLS
CCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEHHHHCCCCCEEECCCCCHHHHHHHH
ALMADEPALD
HHHCCCCCCC
>Mature Secondary Structure 
PNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFDLVVSDVWMPK
CCCCEEEEEECCCCHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
VDGISFLKHAMEIRPGLKVLSVSGGGTAPAALSLKMTEMYGASDILFKPFTPNELLGKLS
CCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEHHHHCCCCCEEECCCCCHHHHHHHH
ALMADEPALD
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]