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The map label for this gene is pepF2 [H]

Identifier: 83593527

GI number: 83593527

Start: 2546081

End: 2547874

Strand: Direct

Name: pepF2 [H]

Synonym: Rru_A2192

Alternate gene names: 83593527

Gene position: 2546081-2547874 (Clockwise)

Preceding gene: 83593521

Following gene: 83593528

Centisome position: 58.49

GC content: 62.93

Gene sequence:

>1794_bases
ATGACGCATGTTGCCGCCCAGGCGAACGCTGTTTCCCCTCTTCCCGTCTGGGACCTCGGCGATCTCTATGATGGTCCCGA
CTCCGCGGCCCTGAAGACCGATCTTGCCGAAACCGAAAGCGGGGCCAAGGCCTTCCGCGACACTTACGCCGGCAAGGTCG
CCGGGCTTGATGGCGCCGCCCTGGGCGAAGCCATCGTCGCCTTCGAGCGCCTATCCGAGACGCTTTATCGCATTCTCAGC
TATTCGCAGCTGCTGCAGGCCGGCGATGTGACCGATGTCGCCATCGGTCAGTTCCATCAGGCGATGATGGAAAAAGGCAC
GGCCATCTCGAGTCAGATGTTGTTCTTCACCCTGGAAATAAACCTTATCGACGACGACGCCCTGGCCGAAAAGCTGAAAA
ATCCGCTGGCCGGGCGTTATGCGCCGTGGATTCGCGATTTGCGGGCCTTCCGCAAGCATCAGCTCTCCGATGACATGGAA
CGCCTGCTCAACGAAAAGGATGTGGCGGGCAGCTCGGCCTGGATGCGGCTGTTCGACGAAACCGTCGCCCATCTGCGCTT
CCCCATCGACAACGAGACCCTGACCTCGACCGAAGCCTTCGATCGCCTGTCCGATCCCCAGCCCGAGCGCCGCAAGGCCG
CCGCCAAGGCCATCGGCGGCGTTCTGGAAGACAATCTGCGGCTGTTTTCGCGTATCACCAATACCCTGGCCAAAGACAAG
CAGATCGATGATTCCTGGCGCGGCTACGCCCATCCGATGGCGGCGCGCAACCTGGGCAATCAGGTGGAAGACGCCGTGGT
CGACGCCCTGGTCTCGGCGGTGCGCGGCAGCTATGGCGACCTCTCGCACCGCTATTACCAGATGAAGGCCAAATGGTTCG
GCCGCGACACCTTGGATTATTGGGACCGCAACGCCCCCCTGCCCGAAGCCGATGACAGCCGCTTCACCTGGGATCAGGCC
CGCGACACCGTTCTGGGAGCTTACGGCGCCTTCTCGCCCGAATTGGCGGCGGTGGGCAAGCGCTTCTTCGACAATCCGTG
GATCGACGTGCCCGCCCGCCCGGGCAAGGCCTCGGGCGCCTTCGCCCATCCCACCGTGCCCTCGGCCCATCCTTACCTGC
TGCTCAACTTCATGGGCCGCACCCGCGACGTCATGACCCTGGCCCATGAACTGGGCCATGGCGTTCATCAGGTGCTGGCC
GCCCGCCAGGGGCCGCTGTTGTCGGATACGCCGCTGACCCTGGCCGAGACGGCCTCGGTCTTTGGCGAGATGCTGACCTT
CCGCGCCATGCTCGATTCCGCCGGCGACGCCAAGCGTCGGCGCATCATGCTGGCGAGCAAGGTCGAGGACATGATCAACA
CGGTGGTCCGCCAGATCGCCTTCCACACCTTCGAGCACAAAGTGCATAGCGAGCGCCTGCAAGGCGAGCTGTCCCCCGAT
CGCCTGTGCGAGATCTGGATGGAGGTGCAGACCGAAAGTCTCGGTCCGGCCTTCCGTTTCGATGCCGAGTACCGCACCTA
TTGGACCTATATCCCCCATTTCATCCACTCGCCGTTCTATGTCTACGCCTATGCCTTCGGCGACTGTCTGGTGAACTCGC
TTTATGCGGTCTATCAGGAGGGGAGCGTTCCCGACTTCCAGGCGAAATACCTGGATATGCTGGGCGCGGGGGGAACGCTG
CGCCACAAGGAGCTTCTCGCCCCCTTCGGGCTCGACGCCTCCAACCCGGATTTCTGGAAGCGCGGGCTTGGGGTGTTGAA
GGGCTTCATTGACGAACTGGAAGAGGTGGCGTGA

Upstream 100 bases:

>100_bases
CCATAACCTGTCTCTTTTCTGTTTCCAAACCCCGCCCCATATTGACCGCGTAGGCACCCCACGGGGGGCGCCCTGTGCAT
AGCCCAAGGAGAGAGTCTTC

Downstream 100 bases:

>100_bases
GCCCCCTCCCTAAAGCAAATCCCCGAGCGATCTGGACCAGATCGCGACGACGATTTGCTTCGATATCAGCATTGTAGAGC
GGTGTCCGAAGACTAGGTTT

Product: peptidase M3B, oligoendopeptidase-related clade 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 597; Mature: 596

Protein sequence:

>597_residues
MTHVAAQANAVSPLPVWDLGDLYDGPDSAALKTDLAETESGAKAFRDTYAGKVAGLDGAALGEAIVAFERLSETLYRILS
YSQLLQAGDVTDVAIGQFHQAMMEKGTAISSQMLFFTLEINLIDDDALAEKLKNPLAGRYAPWIRDLRAFRKHQLSDDME
RLLNEKDVAGSSAWMRLFDETVAHLRFPIDNETLTSTEAFDRLSDPQPERRKAAAKAIGGVLEDNLRLFSRITNTLAKDK
QIDDSWRGYAHPMAARNLGNQVEDAVVDALVSAVRGSYGDLSHRYYQMKAKWFGRDTLDYWDRNAPLPEADDSRFTWDQA
RDTVLGAYGAFSPELAAVGKRFFDNPWIDVPARPGKASGAFAHPTVPSAHPYLLLNFMGRTRDVMTLAHELGHGVHQVLA
ARQGPLLSDTPLTLAETASVFGEMLTFRAMLDSAGDAKRRRIMLASKVEDMINTVVRQIAFHTFEHKVHSERLQGELSPD
RLCEIWMEVQTESLGPAFRFDAEYRTYWTYIPHFIHSPFYVYAYAFGDCLVNSLYAVYQEGSVPDFQAKYLDMLGAGGTL
RHKELLAPFGLDASNPDFWKRGLGVLKGFIDELEEVA

Sequences:

>Translated_597_residues
MTHVAAQANAVSPLPVWDLGDLYDGPDSAALKTDLAETESGAKAFRDTYAGKVAGLDGAALGEAIVAFERLSETLYRILS
YSQLLQAGDVTDVAIGQFHQAMMEKGTAISSQMLFFTLEINLIDDDALAEKLKNPLAGRYAPWIRDLRAFRKHQLSDDME
RLLNEKDVAGSSAWMRLFDETVAHLRFPIDNETLTSTEAFDRLSDPQPERRKAAAKAIGGVLEDNLRLFSRITNTLAKDK
QIDDSWRGYAHPMAARNLGNQVEDAVVDALVSAVRGSYGDLSHRYYQMKAKWFGRDTLDYWDRNAPLPEADDSRFTWDQA
RDTVLGAYGAFSPELAAVGKRFFDNPWIDVPARPGKASGAFAHPTVPSAHPYLLLNFMGRTRDVMTLAHELGHGVHQVLA
ARQGPLLSDTPLTLAETASVFGEMLTFRAMLDSAGDAKRRRIMLASKVEDMINTVVRQIAFHTFEHKVHSERLQGELSPD
RLCEIWMEVQTESLGPAFRFDAEYRTYWTYIPHFIHSPFYVYAYAFGDCLVNSLYAVYQEGSVPDFQAKYLDMLGAGGTL
RHKELLAPFGLDASNPDFWKRGLGVLKGFIDELEEVA
>Mature_596_residues
THVAAQANAVSPLPVWDLGDLYDGPDSAALKTDLAETESGAKAFRDTYAGKVAGLDGAALGEAIVAFERLSETLYRILSY
SQLLQAGDVTDVAIGQFHQAMMEKGTAISSQMLFFTLEINLIDDDALAEKLKNPLAGRYAPWIRDLRAFRKHQLSDDMER
LLNEKDVAGSSAWMRLFDETVAHLRFPIDNETLTSTEAFDRLSDPQPERRKAAAKAIGGVLEDNLRLFSRITNTLAKDKQ
IDDSWRGYAHPMAARNLGNQVEDAVVDALVSAVRGSYGDLSHRYYQMKAKWFGRDTLDYWDRNAPLPEADDSRFTWDQAR
DTVLGAYGAFSPELAAVGKRFFDNPWIDVPARPGKASGAFAHPTVPSAHPYLLLNFMGRTRDVMTLAHELGHGVHQVLAA
RQGPLLSDTPLTLAETASVFGEMLTFRAMLDSAGDAKRRRIMLASKVEDMINTVVRQIAFHTFEHKVHSERLQGELSPDR
LCEIWMEVQTESLGPAFRFDAEYRTYWTYIPHFIHSPFYVYAYAFGDCLVNSLYAVYQEGSVPDFQAKYLDMLGAGGTLR
HKELLAPFGLDASNPDFWKRGLGVLKGFIDELEEVA

Specific function: Hydrolyzes peptides containing between 7 and 17 amino acids with a rather wide specificity [H]

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 66622; Mature: 66491

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHVAAQANAVSPLPVWDLGDLYDGPDSAALKTDLAETESGAKAFRDTYAGKVAGLDGAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHH
LGEAIVAFERLSETLYRILSYSQLLQAGDVTDVAIGQFHQAMMEKGTAISSQMLFFTLEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCEEEEEEEEE
NLIDDDALAEKLKNPLAGRYAPWIRDLRAFRKHQLSDDMERLLNEKDVAGSSAWMRLFDE
EEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH
TVAHLRFPIDNETLTSTEAFDRLSDPQPERRKAAAKAIGGVLEDNLRLFSRITNTLAKDK
HHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QIDDSWRGYAHPMAARNLGNQVEDAVVDALVSAVRGSYGDLSHRYYQMKAKWFGRDTLDY
CCCHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
WDRNAPLPEADDSRFTWDQARDTVLGAYGAFSPELAAVGKRFFDNPWIDVPARPGKASGA
HCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCC
FAHPTVPSAHPYLLLNFMGRTRDVMTLAHELGHGVHQVLAARQGPLLSDTPLTLAETASV
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
FGEMLTFRAMLDSAGDAKRRRIMLASKVEDMINTVVRQIAFHTFEHKVHSERLQGELSPD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RLCEIWMEVQTESLGPAFRFDAEYRTYWTYIPHFIHSPFYVYAYAFGDCLVNSLYAVYQE
HHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
GSVPDFQAKYLDMLGAGGTLRHKELLAPFGLDASNPDFWKRGLGVLKGFIDELEEVA
CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
THVAAQANAVSPLPVWDLGDLYDGPDSAALKTDLAETESGAKAFRDTYAGKVAGLDGAA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHH
LGEAIVAFERLSETLYRILSYSQLLQAGDVTDVAIGQFHQAMMEKGTAISSQMLFFTLEI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCEEEEEEEEE
NLIDDDALAEKLKNPLAGRYAPWIRDLRAFRKHQLSDDMERLLNEKDVAGSSAWMRLFDE
EEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHH
TVAHLRFPIDNETLTSTEAFDRLSDPQPERRKAAAKAIGGVLEDNLRLFSRITNTLAKDK
HHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QIDDSWRGYAHPMAARNLGNQVEDAVVDALVSAVRGSYGDLSHRYYQMKAKWFGRDTLDY
CCCHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
WDRNAPLPEADDSRFTWDQARDTVLGAYGAFSPELAAVGKRFFDNPWIDVPARPGKASGA
HCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCC
FAHPTVPSAHPYLLLNFMGRTRDVMTLAHELGHGVHQVLAARQGPLLSDTPLTLAETASV
CCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
FGEMLTFRAMLDSAGDAKRRRIMLASKVEDMINTVVRQIAFHTFEHKVHSERLQGELSPD
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
RLCEIWMEVQTESLGPAFRFDAEYRTYWTYIPHFIHSPFYVYAYAFGDCLVNSLYAVYQE
HHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
GSVPDFQAKYLDMLGAGGTLRHKELLAPFGLDASNPDFWKRGLGVLKGFIDELEEVA
CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9209029 [H]