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The map label for this gene is yliC [C]

Identifier: 83593511

GI number: 83593511

Start: 2526961

End: 2527935

Strand: Reverse

Name: yliC [C]

Synonym: Rru_A2176

Alternate gene names: 83593511

Gene position: 2527935-2526961 (Counterclockwise)

Preceding gene: 83593512

Following gene: 83593510

Centisome position: 58.08

GC content: 62.97

Gene sequence:

>975_bases
ATGCTGACCGCCCTGGCCTCGCGCTTCGCCCAGATGATCTTCGTGCTGGTCGGCATCAGCATGATCGTCTTTCTGATCTT
TTTCGCCACTCCCGGGTCCGATCCCGCCGCCCGCATCGCCGGGCGCAACGCCTCGCAGGAAACCTTGCAGGTGGTTCGCC
ATGACTTCGGCCTCGACCGGCCGCTGCCGGTGCAATACGCCCTGATGATGAAGCGGCTGTTCATCACCGGCGATCTGACC
TCTTTCGTCAATCGCGGTCAGAAGGTGGTGCCCACCGTGGTCAACGCCATTCCCGTCACCTTGTCGCTGGTGCTGGGCGC
GGGGGTGCTGTGGGTCGTCGGCGGCGTTGTCGTTGGCGTGCTGGCGGCGATGACGCGCGGGCGCTGGCTTGACCGGGTGC
TGATGATCCTTGGCCTGATCGGCGTGTCGATGCCGGTGTTCTGGCTGGGCGAGGTCGCTAATCTGGTCAGCCAAAGCCGC
TTTCACGACACCTTTTTGTTCTCGTGGGTTCCCGCCCTTGGCTACAAGCCGTTTTCCGAGGATCCGGCGGGGTGGTTCAA
AACCCTGGTCATCCCCTGGTTCACCCTGGCGACGCTGTATGTCGGGCTGTATGGCCGGGTGCTGCGCGCCAGTCTGATCG
AGGTGTTGCAGGAGGATTTCATCCGCACCGCCCGGGCCAAGGGGTTGTCCGAGCGCCGCATCCTGCTGCGCCATGGCCTG
CGCTCGTCGCTGGTCGCCTTTGTCACCATGTTCGGCCTGGATTTCGGCGCCCTGGTCGGCGGCGGTGCCTTGTTGGCCGA
AGTGGTGTTCGGTCTGCAGGGCGTGGGCAAGGTGACTTATGACGCCATGCAGAATCTGGATCTGCCGACGATCATGGCCA
CGGTGATTTACGCCTCGTTCTTCGTCGTCTTCGCCAATTTCATTGTCGATGTGCTGTATGCCTTCCTTGATCCCCGGGTG
CGCGATGCCTTCTGA

Upstream 100 bases:

>100_bases
GGCTTGCCATCGTGTTATGCGTTCTGACCTTGAACATCTTCGGGGATGGCGTGCGCGACGCGCTTGATCCCAAGTCCAAG
CTGCGGGTGGGGTAGGGATC

Downstream 100 bases:

>100_bases
CCCCAGCCTTTTGCTTGATGTCCGCGATCTGCGGGTGTCGTTTCGCAGCGAACGCGGTCTGGTGCGCGCCGTCGATGGCG
TGTCGTTCTCGGTCGGCCGC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDRPLPVQYALMMKRLFITGDLT
SFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGVLAAMTRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSR
FHDTFLFSWVPALGYKPFSEDPAGWFKTLVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIRTARAKGLSERRILLRHGL
RSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDAMQNLDLPTIMATVIYASFFVVFANFIVDVLYAFLDPRV
RDAF

Sequences:

>Translated_324_residues
MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDRPLPVQYALMMKRLFITGDLT
SFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGVLAAMTRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSR
FHDTFLFSWVPALGYKPFSEDPAGWFKTLVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIRTARAKGLSERRILLRHGL
RSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDAMQNLDLPTIMATVIYASFFVVFANFIVDVLYAFLDPRV
RDAF
>Mature_324_residues
MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDRPLPVQYALMMKRLFITGDLT
SFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGVLAAMTRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSR
FHDTFLFSWVPALGYKPFSEDPAGWFKTLVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIRTARAKGLSERRILLRHGL
RSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDAMQNLDLPTIMATVIYASFFVVFANFIVDVLYAFLDPRV
RDAF

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=322, Percent_Identity=35.0931677018634, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1789965, Length=342, Percent_Identity=33.3333333333333, Blast_Score=147, Evalue=7e-37,
Organism=Escherichia coli, GI1787761, Length=338, Percent_Identity=33.7278106508876, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1789888, Length=324, Percent_Identity=31.4814814814815, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787497, Length=310, Percent_Identity=31.2903225806452, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787550, Length=259, Percent_Identity=27.4131274131274, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788504, Length=295, Percent_Identity=25.0847457627119, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35575; Mature: 35575

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
PLPVQYALMMKRLFITGDLTSFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGV
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAMTRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSRFHDTFLFSWVPALGYKPFSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DPAGWFKTLVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIRTARAKGLSERRILLRHGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCH
RSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDAMQNLDLPTIMATVIYASF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHH
FVVFANFIVDVLYAFLDPRVRDAF
HHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
PLPVQYALMMKRLFITGDLTSFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGV
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAMTRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSRFHDTFLFSWVPALGYKPFSE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DPAGWFKTLVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIRTARAKGLSERRILLRHGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCH
RSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDAMQNLDLPTIMATVIYASF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHH
FVVFANFIVDVLYAFLDPRVRDAF
HHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]