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The map label for this gene is dppC [H]

Identifier: 83593512

GI number: 83593512

Start: 2527941

End: 2529032

Strand: Reverse

Name: dppC [H]

Synonym: Rru_A2177

Alternate gene names: 83593512

Gene position: 2529032-2527941 (Counterclockwise)

Preceding gene: 83593513

Following gene: 83593511

Centisome position: 58.1

GC content: 65.11

Gene sequence:

>1092_bases
GTGAGCCGAGAGGATCGTCGCGTCGTGAGCTTCGCCTTTTCCACCCGCCCGCCGGCGGGCCAACCAGACGACAAGGGGGG
GCGGGCGCCCCCCCTCACTTCCGAACCGCCCCCCCAGGGCCCCTGGGCCGTCGCGCTGCGCAAGCTGTGGCGCGACCGGG
CGGCGATGGTCGCTCTCGCGGTGTTCCTGGTCGTCTGCGCCCTCTGCCTGATGGCCCCGCTCTATGCCCAGTTCATCGCC
GGAAGCGATCCCTTCCAGACCAATCTCAATGGCGAGATCGTTGTCGATGGCGAGGTCCGGGCCGTTCTCGAAGCCTCGAC
CGAGGGGTTGGGCCTGGGGATGACGCCGATCGGTCCGACCTGGCGACTGGGACCCTATATGCTGGGCGCCGACAACCAGG
GCCGCGACGTCGCCGCCCGCCTGCTTTATGGCGGCCGCGATTCCTTGTTGATCGCCGGGTCCTCGACGCTGATCACCCTG
GTGCTCGCCACCTTTGTCGGCGTGGTGGCCGGCTATTTCGGCGGTGTCGTCGATGGGGTGTTATCACGGTTTCTTGATAT
CCTCTGGGCCTTTCCGATCTATCTGCTGGCGATTTCGCTGTCGATCGTGCTGATCAGCAAAGGGCTCGAGATCGGGCCGA
TTTCGATCACGGCGGGCAGTCTGGCCCTGCCGATCACCATCATCGGCATCGTTTATGTGCCCTATGTCGCCCGGCCGATC
CGCGGCCATGTGCTGTCGTTGATGACCAGCGAATTCGTCCTGGCCGCCGTCGGCCTCGGCGTGCCTTCGGCCCGCATTCT
GCTGCGCGACATCCTACCCAATGTCATGACGCGGGTGATCGTGTTCATCCCGCTGATGATGGCGCTCAATATGCTGACAG
AATCCTCGCTGTCGTTCCTGTCGATCGGCGTACAGCCGCCCGACGCCAGTTGGGGCACGATCATCCAGGACGGCCAGGGC
CTGCTCTACAGCCGGCCGATGGTCGCCTTCGCCCCGGGGCTTGCCATCGTGTTATGCGTTCTGACCTTGAACATCTTCGG
GGATGGCGTGCGCGACGCGCTTGATCCCAAGTCCAAGCTGCGGGTGGGGTAG

Upstream 100 bases:

>100_bases
TGTTGTTCACCCCCAAGCAGGTCACCTTCCTGTCGGCGCGGGTGAAGGGCTTCGTCTTCAATAATCAGACGAAATGGCTG
ATCAGCCAGTCGTGGGTCGA

Downstream 100 bases:

>100_bases
GGATCATGCTGACCGCCCTGGCCTCGCGCTTCGCCCAGATGATCTTCGTGCTGGTCGGCATCAGCATGATCGTCTTTCTG
ATCTTTTTCGCCACTCCCGG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSREDRRVVSFAFSTRPPAGQPDDKGGRAPPLTSEPPPQGPWAVALRKLWRDRAAMVALAVFLVVCALCLMAPLYAQFIA
GSDPFQTNLNGEIVVDGEVRAVLEASTEGLGLGMTPIGPTWRLGPYMLGADNQGRDVAARLLYGGRDSLLIAGSSTLITL
VLATFVGVVAGYFGGVVDGVLSRFLDILWAFPIYLLAISLSIVLISKGLEIGPISITAGSLALPITIIGIVYVPYVARPI
RGHVLSLMTSEFVLAAVGLGVPSARILLRDILPNVMTRVIVFIPLMMALNMLTESSLSFLSIGVQPPDASWGTIIQDGQG
LLYSRPMVAFAPGLAIVLCVLTLNIFGDGVRDALDPKSKLRVG

Sequences:

>Translated_363_residues
MSREDRRVVSFAFSTRPPAGQPDDKGGRAPPLTSEPPPQGPWAVALRKLWRDRAAMVALAVFLVVCALCLMAPLYAQFIA
GSDPFQTNLNGEIVVDGEVRAVLEASTEGLGLGMTPIGPTWRLGPYMLGADNQGRDVAARLLYGGRDSLLIAGSSTLITL
VLATFVGVVAGYFGGVVDGVLSRFLDILWAFPIYLLAISLSIVLISKGLEIGPISITAGSLALPITIIGIVYVPYVARPI
RGHVLSLMTSEFVLAAVGLGVPSARILLRDILPNVMTRVIVFIPLMMALNMLTESSLSFLSIGVQPPDASWGTIIQDGQG
LLYSRPMVAFAPGLAIVLCVLTLNIFGDGVRDALDPKSKLRVG
>Mature_362_residues
SREDRRVVSFAFSTRPPAGQPDDKGGRAPPLTSEPPPQGPWAVALRKLWRDRAAMVALAVFLVVCALCLMAPLYAQFIAG
SDPFQTNLNGEIVVDGEVRAVLEASTEGLGLGMTPIGPTWRLGPYMLGADNQGRDVAARLLYGGRDSLLIAGSSTLITLV
LATFVGVVAGYFGGVVDGVLSRFLDILWAFPIYLLAISLSIVLISKGLEIGPISITAGSLALPITIIGIVYVPYVARPIR
GHVLSLMTSEFVLAAVGLGVPSARILLRDILPNVMTRVIVFIPLMMALNMLTESSLSFLSIGVQPPDASWGTIIQDGQGL
LYSRPMVAFAPGLAIVLCVLTLNIFGDGVRDALDPKSKLRVG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=336, Percent_Identity=30.952380952381, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787498, Length=325, Percent_Identity=31.3846153846154, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1789964, Length=244, Percent_Identity=37.7049180327869, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1787549, Length=328, Percent_Identity=30.1829268292683, Blast_Score=111, Evalue=8e-26,
Organism=Escherichia coli, GI1787760, Length=233, Percent_Identity=30.4721030042918, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789889, Length=232, Percent_Identity=31.4655172413793, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788505, Length=231, Percent_Identity=31.6017316017316, Blast_Score=101, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38521; Mature: 38390

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSREDRRVVSFAFSTRPPAGQPDDKGGRAPPLTSEPPPQGPWAVALRKLWRDRAAMVALA
CCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VFLVVCALCLMAPLYAQFIAGSDPFQTNLNGEIVVDGEVRAVLEASTEGLGLGMTPIGPT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
WRLGPYMLGADNQGRDVAARLLYGGRDSLLIAGSSTLITLVLATFVGVVAGYFGGVVDGV
CCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRFLDILWAFPIYLLAISLSIVLISKGLEIGPISITAGSLALPITIIGIVYVPYVARPI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
RGHVLSLMTSEFVLAAVGLGVPSARILLRDILPNVMTRVIVFIPLMMALNMLTESSLSFL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHE
SIGVQPPDASWGTIIQDGQGLLYSRPMVAFAPGLAIVLCVLTLNIFGDGVRDALDPKSKL
EECCCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHC
RVG
CCC
>Mature Secondary Structure 
SREDRRVVSFAFSTRPPAGQPDDKGGRAPPLTSEPPPQGPWAVALRKLWRDRAAMVALA
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VFLVVCALCLMAPLYAQFIAGSDPFQTNLNGEIVVDGEVRAVLEASTEGLGLGMTPIGPT
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCC
WRLGPYMLGADNQGRDVAARLLYGGRDSLLIAGSSTLITLVLATFVGVVAGYFGGVVDGV
CCCCCEEECCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRFLDILWAFPIYLLAISLSIVLISKGLEIGPISITAGSLALPITIIGIVYVPYVARPI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
RGHVLSLMTSEFVLAAVGLGVPSARILLRDILPNVMTRVIVFIPLMMALNMLTESSLSFL
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHE
SIGVQPPDASWGTIIQDGQGLLYSRPMVAFAPGLAIVLCVLTLNIFGDGVRDALDPKSKL
EECCCCCCCCCCCEEECCCCCEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHC
RVG
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]