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The map label for this gene is 83593449

Identifier: 83593449

GI number: 83593449

Start: 2453128

End: 2454402

Strand: Reverse

Name: 83593449

Synonym: Rru_A2114

Alternate gene names: NA

Gene position: 2454402-2453128 (Counterclockwise)

Preceding gene: 83593450

Following gene: 83593447

Centisome position: 56.39

GC content: 69.88

Gene sequence:

>1275_bases
GTGACGCCAAACGCTCCCCCCCGCCCATCGACCGTTGTTTTTGGGGGGGGGCGCGATTGGGCGGCGCTGGCCGCCCTGGC
CGCCGTGCCGCTGACGGCGGCGCTGACCCATAGCCAATTGGTCATCCCCGTTGGGCTGATCGCCCTGCTTGGTCTGGTGA
CGGTCGCTCTGGAAGATCGGCCGCTATCGGCCCGTCTGCCGCTGCGCTCGCCCTTTCTCGCCCTTGGCGCCCTGATCGCC
CTATGGGGTCTGCTCAGCCTGGGATGGACGCCGACGGGCAAGGCGGCGCCGCGCGACGCCTGGACGGTGGTGGCGATCGT
TCTCGGCACGCCGCTGTGCGCCCGCCTGCTCGCCCGCCCGGTTGGGGAGGGGCCCTGGGGGCTGATGCCACGGGTGATGG
CCACCGTTCTTGGCCTCTGCGCCCTACTGGTCTTCATCGAAACCTACAGCCTGTGGGGTCCGCAGGTGCTGATCCAAGGC
GCCGATGCGCCGGTCGCCAAACGCGTTCTGGCGATGAACGGCGTGATGTCGGTGCTGAGCTTGCTGGTTTGGCCGACGGC
TTTGGCGCTGTGGATCCAGGGACGGCGGCGGTGGGCGATCGGGCTGGCTGTGGTCGTCGCCCTGGCGGTGGCGCGCGGCA
CCTCGGAAGCCTCGCTGCTCGGGCTGTGTGTCGGCGGTCTGGCCTTCGCCCTGGCCCTGCTGGCGCCGGTGCTGGTGGTT
CGGCTGGTGAGCTGGGGCATGGCGGTGGTGATGGTGGCCTCGCCTTTGGTGATCAAGGCCGTTTTCGCCAGTGGCCTGTT
CACCCTGATCGCCCCCCATCTGGGCTTCTCGGTGCAGCATCGCTTGCTGATCTGGCGCTTCATCGCCGACCGTCTGGCGG
AAAAACCGTGGATGGGCTGGGGGATCGCCGCCAGCCGCAGTTTCCAGGATTTGCGGGTGCCGACGGCGTTTCACGACGGC
GCGCTGGGCTGGGTGGTGCGCGATCTGCAGATCGTGCCGATCCATCCCCATAACATGCCGCTGCAGCTGTGGTTCGAACT
GGGCGTGGTTGGGGTGGTGCCGGTGCTGATCGGCCTGGGGCTGCTGGGCTGGCGCCTGGGCAAGCTGGCCGACGGCCGCT
TGGCAACGGCGACGGTCGCCGGGCTGCTGGCCAGCGGTCTGACCATGGCCATGGGCACCTATAACCTGTGGCAGGGCTGG
GTGCTCTGCGCCGCCGCCGTCGCCGGCTGCCTGATGGCCGGCGCCCTGGCGACCGGGCGCCAGGGCCGGTGTTAG

Upstream 100 bases:

>100_bases
GGATCGGAAGATCCGACGGTCATCACCTGATCCCTTTCGGATCTTGATTTGATCCCTTTGGGATCTTTGGCAAGGTCGCC
CTTTCGGAAGCAGTACGCCC

Downstream 100 bases:

>100_bases
GGGCCGGCGCCAGAGTTCGGGGGCGCTATTTCTGCGGGGCGACGACCAGACAGGAATGGTCGTTGCGGACGAGGGTGGCG
CAGGCGGTGCGGGCCGCCGC

Product: O-antigen polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MTPNAPPRPSTVVFGGGRDWAALAALAAVPLTAALTHSQLVIPVGLIALLGLVTVALEDRPLSARLPLRSPFLALGALIA
LWGLLSLGWTPTGKAAPRDAWTVVAIVLGTPLCARLLARPVGEGPWGLMPRVMATVLGLCALLVFIETYSLWGPQVLIQG
ADAPVAKRVLAMNGVMSVLSLLVWPTALALWIQGRRRWAIGLAVVVALAVARGTSEASLLGLCVGGLAFALALLAPVLVV
RLVSWGMAVVMVASPLVIKAVFASGLFTLIAPHLGFSVQHRLLIWRFIADRLAEKPWMGWGIAASRSFQDLRVPTAFHDG
ALGWVVRDLQIVPIHPHNMPLQLWFELGVVGVVPVLIGLGLLGWRLGKLADGRLATATVAGLLASGLTMAMGTYNLWQGW
VLCAAAVAGCLMAGALATGRQGRC

Sequences:

>Translated_424_residues
MTPNAPPRPSTVVFGGGRDWAALAALAAVPLTAALTHSQLVIPVGLIALLGLVTVALEDRPLSARLPLRSPFLALGALIA
LWGLLSLGWTPTGKAAPRDAWTVVAIVLGTPLCARLLARPVGEGPWGLMPRVMATVLGLCALLVFIETYSLWGPQVLIQG
ADAPVAKRVLAMNGVMSVLSLLVWPTALALWIQGRRRWAIGLAVVVALAVARGTSEASLLGLCVGGLAFALALLAPVLVV
RLVSWGMAVVMVASPLVIKAVFASGLFTLIAPHLGFSVQHRLLIWRFIADRLAEKPWMGWGIAASRSFQDLRVPTAFHDG
ALGWVVRDLQIVPIHPHNMPLQLWFELGVVGVVPVLIGLGLLGWRLGKLADGRLATATVAGLLASGLTMAMGTYNLWQGW
VLCAAAVAGCLMAGALATGRQGRC
>Mature_423_residues
TPNAPPRPSTVVFGGGRDWAALAALAAVPLTAALTHSQLVIPVGLIALLGLVTVALEDRPLSARLPLRSPFLALGALIAL
WGLLSLGWTPTGKAAPRDAWTVVAIVLGTPLCARLLARPVGEGPWGLMPRVMATVLGLCALLVFIETYSLWGPQVLIQGA
DAPVAKRVLAMNGVMSVLSLLVWPTALALWIQGRRRWAIGLAVVVALAVARGTSEASLLGLCVGGLAFALALLAPVLVVR
LVSWGMAVVMVASPLVIKAVFASGLFTLIAPHLGFSVQHRLLIWRFIADRLAEKPWMGWGIAASRSFQDLRVPTAFHDGA
LGWVVRDLQIVPIHPHNMPLQLWFELGVVGVVPVLIGLGLLGWRLGKLADGRLATATVAGLLASGLTMAMGTYNLWQGWV
LCAAAVAGCLMAGALATGRQGRC

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the O-antigen polymerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007016 [H]

Pfam domain/function: PF04932 Wzy_C [H]

EC number: NA

Molecular weight: Translated: 44552; Mature: 44421

Theoretical pI: Translated: 11.44; Mature: 11.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPNAPPRPSTVVFGGGRDWAALAALAAVPLTAALTHSQLVIPVGLIALLGLVTVALEDR
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PLSARLPLRSPFLALGALIALWGLLSLGWTPTGKAAPRDAWTVVAIVLGTPLCARLLARP
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCC
VGEGPWGLMPRVMATVLGLCALLVFIETYSLWGPQVLIQGADAPVAKRVLAMNGVMSVLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
LLVWPTALALWIQGRRRWAIGLAVVVALAVARGTSEASLLGLCVGGLAFALALLAPVLVV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLVSWGMAVVMVASPLVIKAVFASGLFTLIAPHLGFSVQHRLLIWRFIADRLAEKPWMGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
GIAASRSFQDLRVPTAFHDGALGWVVRDLQIVPIHPHNMPLQLWFELGVVGVVPVLIGLG
CHHHCCCHHHCCCCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LLGWRLGKLADGRLATATVAGLLASGLTMAMGTYNLWQGWVLCAAAVAGCLMAGALATGR
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGRC
CCCC
>Mature Secondary Structure 
TPNAPPRPSTVVFGGGRDWAALAALAAVPLTAALTHSQLVIPVGLIALLGLVTVALEDR
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
PLSARLPLRSPFLALGALIALWGLLSLGWTPTGKAAPRDAWTVVAIVLGTPLCARLLARP
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCC
VGEGPWGLMPRVMATVLGLCALLVFIETYSLWGPQVLIQGADAPVAKRVLAMNGVMSVLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
LLVWPTALALWIQGRRRWAIGLAVVVALAVARGTSEASLLGLCVGGLAFALALLAPVLVV
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLVSWGMAVVMVASPLVIKAVFASGLFTLIAPHLGFSVQHRLLIWRFIADRLAEKPWMGW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCC
GIAASRSFQDLRVPTAFHDGALGWVVRDLQIVPIHPHNMPLQLWFELGVVGVVPVLIGLG
CHHHCCCHHHCCCCCCCCCCHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
LLGWRLGKLADGRLATATVAGLLASGLTMAMGTYNLWQGWVLCAAAVAGCLMAGALATGR
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
QGRC
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA