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The map label for this gene is ytfM [H]

Identifier: 83593434

GI number: 83593434

Start: 2432688

End: 2434586

Strand: Reverse

Name: ytfM [H]

Synonym: Rru_A2099

Alternate gene names: 83593434

Gene position: 2434586-2432688 (Counterclockwise)

Preceding gene: 83593435

Following gene: 83593433

Centisome position: 55.93

GC content: 67.88

Gene sequence:

>1899_bases
ATGGGGCCTGCGGGCAAGGGGATTTATCGCAGTATGATAAAGGCGCGCCCGGCGACACGCGCCCTGGTGGCGGCCGCCTT
TGTCGCCCTGCTCGCCCGCTCGGGCCTTGCCGCCGGTGATCCTGAACCCGGCACGAGCGAGGCCGAAAAGGCCGCCGTCA
ATCGCCCCGGGTCGGGGGCGGGGTTTCCCTATCGGGTCACCATCACCGTCGCCAATGATCCCGAGGACCTGACCCCCTGG
CTACGCGAGGTTTCCCAACTGGCCGCCCTGGAAGGCGATCCGCCCTTTACCCGCATGGGTTTGGAGCGCCGCATCCAATC
CGATCTCGATCGCTTCCATAAGGCCCTGCGCTCGCGCGGCTATTACGATGCGGACTTGAGCGCCGATGTCCGCGACTCCG
CGCCCGGGCCGGCCATGGTCGAGGTTCGCGCCGATCCCGGCCCGGTTTATCAGGTCGCCAAGGTCGCCATGGACTACCGG
GGGGCAAGCGATGTCGACGGCCTGCCCCAGGGGGCCGACGCCGTCGGGCTGAAGCTGGGGCAGACGGCGCGCGCCGATGA
CGTGCTGGCCGGCGAGAAGCGGCTGAGCGAGGACTTGCGCAAATCCGCCCGGCCGCTGGCCAAGGTGGTCGACAAGGTGG
TGGTGGTCGATCACGCCGGCCGGACCATGGAGGTGACCTATGTGGTCGAGCCCGGGCCCGTCGCCGATTTCGGCGCCTTG
CGGGTCAGCGGCCTTGATCGGGTGAAAGAGTCCTTCGTGCGCAAGATGGTGCCCTGGCGCGAGGGTGAGGCCTATGACGA
GGACCAACTGCGCGCTCTGCGCAAGCGCCTGTCCGACAGCCGGCTGTTTGCCACCGTGCACCTGACGCCGGCGGCCGAGG
TTGGCGCCGATGGCCGCATTCCCATCGATTTAACGGTCAGCGAGGGGGCGCACCGCACCATTTCCGCCGGCGTCAGCTAT
GCCACCGATACGGGGGCGGGGGCGACGCTGCGCTGGGAACACCGCAATCTGCTGGGGGCGGGCGAGAAGTTCCGCGCCGA
TGTCGTCGCCGCCCAAAAAGAGCAATCCCTCGACCTCACCTTTCGCAAACCCTATTTCCTCGATCCCCGCCAGACCTTGA
CCATGAACGCCAGCGTTTCGCGCGAGGATGGCGAGGCCTATAGCGGCGAGGTCGGCGAACTCGGCATGGGCCTGGAACGC
GAGGTTTGGGAGCACTGGCGCCTCAGCGGCGGGTTGGCCTTTGAATACGGCCAGTTGGTCTGGGAGGCCGATCCCTCCGA
CGCGCGCCGCCGCCATATGCTGGCCGGCGTGCCGCTGTCGGCCATCCGCGATGGGACCGACGATCTGCTCGATCCCACCA
CCGGCACCCGCCTCGCCCTGGCCGCCACTCCTTTCGCCGGACAGGTCGATGGCGCCGGCACGACCTTTCTCGTGCTTGAA
ACCACCGGTTCGGCCTATTACCCGGCGATCGAGAACCGCCTTGTGCTGGCCGGGCGGGCCCGGCTGGCCAGCCTGACCGG
GGCCGATCTCACCAATGTGCCGCCCAATCACCGCCTGTTCGCCGGTGGCGGCGGATCGGTGCGCGGCTATGGCCATAACC
TGATCGGTCCGCTCAATGGCGACGACGATCCGACCGGCGGCCGCTCGGCCGCCGAAATCGGCGTCGAGGCCCGCATCAAG
ATCACCGAGACCATCGGCATCGTGCCCTTTCTCGATGGCGGTCTGGTAACCACCGAATCCTGGCCGAGCTTCAGCGAGGA
TATCCGCTGGGGCGCCGGTTTGGGGGTGCGCTACCACACCTCGTTCGGGCCGCTGCGCGCCGATGTCGCCATGCCGCTCA
ATCCGCGCGGATCGGACGACAGCTTCCAGGTTTATATCAGTCTCGGGCAGGCGTTCTGA

Upstream 100 bases:

>100_bases
TTTTTTTGCGACCAATCGCCCCGCTGCCGGCATCCCTCCCGCCTGTGGAACGTTGCGTTTCGGTCAAACGGGTTCCATCT
TTTGTCGAGGGGGATAGCCG

Downstream 100 bases:

>100_bases
CATGGCGACAACCGATCCTCTTCCTCCGCCCTCCCAGGCACCGGGCGCGCAGCTGGCCCGTGGGCTGGCCTGGGGTGTTT
CCGGGCTGCTTGCCCTGCTG

Product: surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 632; Mature: 631

Protein sequence:

>632_residues
MGPAGKGIYRSMIKARPATRALVAAAFVALLARSGLAAGDPEPGTSEAEKAAVNRPGSGAGFPYRVTITVANDPEDLTPW
LREVSQLAALEGDPPFTRMGLERRIQSDLDRFHKALRSRGYYDADLSADVRDSAPGPAMVEVRADPGPVYQVAKVAMDYR
GASDVDGLPQGADAVGLKLGQTARADDVLAGEKRLSEDLRKSARPLAKVVDKVVVVDHAGRTMEVTYVVEPGPVADFGAL
RVSGLDRVKESFVRKMVPWREGEAYDEDQLRALRKRLSDSRLFATVHLTPAAEVGADGRIPIDLTVSEGAHRTISAGVSY
ATDTGAGATLRWEHRNLLGAGEKFRADVVAAQKEQSLDLTFRKPYFLDPRQTLTMNASVSREDGEAYSGEVGELGMGLER
EVWEHWRLSGGLAFEYGQLVWEADPSDARRRHMLAGVPLSAIRDGTDDLLDPTTGTRLALAATPFAGQVDGAGTTFLVLE
TTGSAYYPAIENRLVLAGRARLASLTGADLTNVPPNHRLFAGGGGSVRGYGHNLIGPLNGDDDPTGGRSAAEIGVEARIK
ITETIGIVPFLDGGLVTTESWPSFSEDIRWGAGLGVRYHTSFGPLRADVAMPLNPRGSDDSFQVYISLGQAF

Sequences:

>Translated_632_residues
MGPAGKGIYRSMIKARPATRALVAAAFVALLARSGLAAGDPEPGTSEAEKAAVNRPGSGAGFPYRVTITVANDPEDLTPW
LREVSQLAALEGDPPFTRMGLERRIQSDLDRFHKALRSRGYYDADLSADVRDSAPGPAMVEVRADPGPVYQVAKVAMDYR
GASDVDGLPQGADAVGLKLGQTARADDVLAGEKRLSEDLRKSARPLAKVVDKVVVVDHAGRTMEVTYVVEPGPVADFGAL
RVSGLDRVKESFVRKMVPWREGEAYDEDQLRALRKRLSDSRLFATVHLTPAAEVGADGRIPIDLTVSEGAHRTISAGVSY
ATDTGAGATLRWEHRNLLGAGEKFRADVVAAQKEQSLDLTFRKPYFLDPRQTLTMNASVSREDGEAYSGEVGELGMGLER
EVWEHWRLSGGLAFEYGQLVWEADPSDARRRHMLAGVPLSAIRDGTDDLLDPTTGTRLALAATPFAGQVDGAGTTFLVLE
TTGSAYYPAIENRLVLAGRARLASLTGADLTNVPPNHRLFAGGGGSVRGYGHNLIGPLNGDDDPTGGRSAAEIGVEARIK
ITETIGIVPFLDGGLVTTESWPSFSEDIRWGAGLGVRYHTSFGPLRADVAMPLNPRGSDDSFQVYISLGQAF
>Mature_631_residues
GPAGKGIYRSMIKARPATRALVAAAFVALLARSGLAAGDPEPGTSEAEKAAVNRPGSGAGFPYRVTITVANDPEDLTPWL
REVSQLAALEGDPPFTRMGLERRIQSDLDRFHKALRSRGYYDADLSADVRDSAPGPAMVEVRADPGPVYQVAKVAMDYRG
ASDVDGLPQGADAVGLKLGQTARADDVLAGEKRLSEDLRKSARPLAKVVDKVVVVDHAGRTMEVTYVVEPGPVADFGALR
VSGLDRVKESFVRKMVPWREGEAYDEDQLRALRKRLSDSRLFATVHLTPAAEVGADGRIPIDLTVSEGAHRTISAGVSYA
TDTGAGATLRWEHRNLLGAGEKFRADVVAAQKEQSLDLTFRKPYFLDPRQTLTMNASVSREDGEAYSGEVGELGMGLERE
VWEHWRLSGGLAFEYGQLVWEADPSDARRRHMLAGVPLSAIRDGTDDLLDPTTGTRLALAATPFAGQVDGAGTTFLVLET
TGSAYYPAIENRLVLAGRARLASLTGADLTNVPPNHRLFAGGGGSVRGYGHNLIGPLNGDDDPTGGRSAAEIGVEARIKI
TETIGIVPFLDGGLVTTESWPSFSEDIRWGAGLGVRYHTSFGPLRADVAMPLNPRGSDDSFQVYISLGQAF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=400, Percent_Identity=25.25, Blast_Score=113, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 67646; Mature: 67515

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPAGKGIYRSMIKARPATRALVAAAFVALLARSGLAAGDPEPGTSEAEKAAVNRPGSGA
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
GFPYRVTITVANDPEDLTPWLREVSQLAALEGDPPFTRMGLERRIQSDLDRFHKALRSRG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
YYDADLSADVRDSAPGPAMVEVRADPGPVYQVAKVAMDYRGASDVDGLPQGADAVGLKLG
CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCEECC
QTARADDVLAGEKRLSEDLRKSARPLAKVVDKVVVVDHAGRTMEVTYVVEPGPVADFGAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCHH
RVSGLDRVKESFVRKMVPWREGEAYDEDQLRALRKRLSDSRLFATVHLTPAAEVGADGRI
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCCCCCC
PIDLTVSEGAHRTISAGVSYATDTGAGATLRWEHRNLLGAGEKFRADVVAAQKEQSLDLT
EEEEEECCCCCEEHHCCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEE
FRKPYFLDPRQTLTMNASVSREDGEAYSGEVGELGMGLEREVWEHWRLSGGLAFEYGQLV
ECCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEECCCEE
WEADPSDARRRHMLAGVPLSAIRDGTDDLLDPTTGTRLALAATPFAGQVDGAGTTFLVLE
EECCCCHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEE
TTGSAYYPAIENRLVLAGRARLASLTGADLTNVPPNHRLFAGGGGSVRGYGHNLIGPLNG
ECCCEECCHHCCCEEEECCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
DDDPTGGRSAAEIGVEARIKITETIGIVPFLDGGLVTTESWPSFSEDIRWGAGLGVRYHT
CCCCCCCCHHHHCCCEEEEEEEEEECEEEEECCCEEECCCCCCHHHHCCCCCCCCEEEEC
SFGPLRADVAMPLNPRGSDDSFQVYISLGQAF
CCCCEEECEECCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
GPAGKGIYRSMIKARPATRALVAAAFVALLARSGLAAGDPEPGTSEAEKAAVNRPGSGA
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCC
GFPYRVTITVANDPEDLTPWLREVSQLAALEGDPPFTRMGLERRIQSDLDRFHKALRSRG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
YYDADLSADVRDSAPGPAMVEVRADPGPVYQVAKVAMDYRGASDVDGLPQGADAVGLKLG
CCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHCEECC
QTARADDVLAGEKRLSEDLRKSARPLAKVVDKVVVVDHAGRTMEVTYVVEPGPVADFGAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEEEEECCCCCCCCCHH
RVSGLDRVKESFVRKMVPWREGEAYDEDQLRALRKRLSDSRLFATVHLTPAAEVGADGRI
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCHHHCCCCCCC
PIDLTVSEGAHRTISAGVSYATDTGAGATLRWEHRNLLGAGEKFRADVVAAQKEQSLDLT
EEEEEECCCCCEEHHCCCEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEE
FRKPYFLDPRQTLTMNASVSREDGEAYSGEVGELGMGLEREVWEHWRLSGGLAFEYGQLV
ECCCEEECCCCEEEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEECCCEE
WEADPSDARRRHMLAGVPLSAIRDGTDDLLDPTTGTRLALAATPFAGQVDGAGTTFLVLE
EECCCCHHHHHHHHCCCCHHHHCCCCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEE
TTGSAYYPAIENRLVLAGRARLASLTGADLTNVPPNHRLFAGGGGSVRGYGHNLIGPLNG
ECCCEECCHHCCCEEEECCHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
DDDPTGGRSAAEIGVEARIKITETIGIVPFLDGGLVTTESWPSFSEDIRWGAGLGVRYHT
CCCCCCCCHHHHCCCEEEEEEEEEECEEEEECCCEEECCCCCCHHHHCCCCCCCCEEEEC
SFGPLRADVAMPLNPRGSDDSFQVYISLGQAF
CCCCEEECEECCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]