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The map label for this gene is yliC [C]

Identifier: 83593348

GI number: 83593348

Start: 2327236

End: 2328216

Strand: Reverse

Name: yliC [C]

Synonym: Rru_A2013

Alternate gene names: 83593348

Gene position: 2328216-2327236 (Counterclockwise)

Preceding gene: 83593349

Following gene: 83593347

Centisome position: 53.49

GC content: 64.73

Gene sequence:

>981_bases
ATGAGCCTTTTCCTGTTCGCCCTGCGCCGGTTGGCGACAAGCATCCCCAGTTTGCTGATCATTCTGGTCGGCGTTTTTCT
GCTGTTGCAACTCGCCCCGGGCGACACGGTCGACGCGCTGTTGGCCCAGATGGGCGGCGGCGATGCCCAGATCATCGAAA
CGCTCCGCCACTTCTATGGGCTTGACGCCCCGGTGGCGGTGCAGTTGGGGCGCTATCTGCTGCGCCTCGTGCAGTTCGAC
CTGGGCTATTCGGCCATCTACGGCAAGCCGGTGATCGATGTGATCGTCGAACGCCTGCCGGTCACCTTGCTGCTGATGGG
CGCCTCGCTGGTGGTGGCGGTGAGCGGCGGCGTGGCCCTGGGCGTTCTGGCGGCGCGGCGGGTCAATAAATGGCCCGATA
CGCTGATCTCCACCCTTGGGCTGGTCTTCTACGCCACGCCGTCGTTCTGGCTGGGGCTGATGGCCGTGGTCGTCTTCGCC
GTCAAGCTGGGCTGGCTGCCGCCGGGCGGCTTCGAGGAGGTGGGGGCGGGCTATCAGGGACTGACCCGGGCCCTGGATAT
CGCCCGCCATATGGCCCTGCCGACGATCACCCTGTCGCTGATTTTCCTTGCCACCTATCTGCGGATCATGCGCGCCTCGA
TGCTCGAGGTCTCCTCGCTCGATTTCGTCCGCACGGCGCGGGCCAAGGGGGTGGACGAGACCAAGATCGTCACCCACCAC
GTGCTGCGCAACGCCCTGTTGCCGATGCTGACCCTGATCGGCCTGAACGCCAGCACCATGCTGGGCGGATCGGTGGTGGT
GGAAAGCGTCTTCACCCTGCCGGGCCTCGGCCGGCTGGCTTACGAATCGGTGGTGCAGCGCGATCTCAATACCCTGCTCG
GCATTGTCTTGCTGTCGGCGGTTCTGGTGATCGTCGTCAATTTCATCGTCGACCTGCTGTATGCCCGGCTTGATCCGCGC
ATCCGCGCCAAAGGACACTGA

Upstream 100 bases:

>100_bases
CCAGTGACTGGCATGATACCTGGATTGCCAAGTAGGATTTACCATCGGGGTCGGCGGGCCGCTTTCGGGTGGCCCGCCAG
AGTGAAAATCGGACGATTTC

Downstream 100 bases:

>100_bases
AGCGATGGCCGCTTTTCGTCGCTATTTCCGCAATCCGTCGGCCGTGCTCGGGCTGGTCTTGCTGATCGCCGTCCTCGGTT
TGGCGCTCAGCGCCGATCTG

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MSLFLFALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQIIETLRHFYGLDAPVAVQLGRYLLRLVQFD
LGYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVLAARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFA
VKLGWLPPGGFEEVGAGYQGLTRALDIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHH
VLRNALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVIVVNFIVDLLYARLDPR
IRAKGH

Sequences:

>Translated_326_residues
MSLFLFALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQIIETLRHFYGLDAPVAVQLGRYLLRLVQFD
LGYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVLAARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFA
VKLGWLPPGGFEEVGAGYQGLTRALDIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHH
VLRNALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVIVVNFIVDLLYARLDPR
IRAKGH
>Mature_325_residues
SLFLFALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQIIETLRHFYGLDAPVAVQLGRYLLRLVQFDL
GYSAIYGKPVIDVIVERLPVTLLLMGASLVVAVSGGVALGVLAARRVNKWPDTLISTLGLVFYATPSFWLGLMAVVVFAV
KLGWLPPGGFEEVGAGYQGLTRALDIARHMALPTITLSLIFLATYLRIMRASMLEVSSLDFVRTARAKGVDETKIVTHHV
LRNALLPMLTLIGLNASTMLGGSVVVESVFTLPGLGRLAYESVVQRDLNTLLGIVLLSAVLVIVVNFIVDLLYARLDPRI
RAKGH

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=319, Percent_Identity=42.6332288401254, Blast_Score=224, Evalue=6e-60,
Organism=Escherichia coli, GI1789888, Length=318, Percent_Identity=35.8490566037736, Blast_Score=198, Evalue=4e-52,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=35.4166666666667, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787497, Length=319, Percent_Identity=35.7366771159875, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1787761, Length=320, Percent_Identity=35.9375, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787550, Length=261, Percent_Identity=32.9501915708812, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1788504, Length=371, Percent_Identity=28.8409703504043, Blast_Score=129, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35168; Mature: 35036

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLFLFALRRLATSIPSLLIILVGVFLLLQLAPGDTVDALLAQMGGGDAQIIETLRHFYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHC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HHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]