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The map label for this gene is rlp1 [H]

Identifier: 83593333

GI number: 83593333

Start: 2307874

End: 2308998

Strand: Direct

Name: rlp1 [H]

Synonym: Rru_A1998

Alternate gene names: 83593333

Gene position: 2307874-2308998 (Clockwise)

Preceding gene: 83593332

Following gene: 83593335

Centisome position: 53.02

GC content: 68.18

Gene sequence:

>1125_bases
ATGACGGACAGACTGCGCGCGACCTATCGGGTAAAGGCGACGGCGGCGTCGATCGAGGCCCGGGCCAAGGGAATCGCCGT
TGAGCAGAGCGTTGAAATGCCGCTCTCGGCCATCGATGACCCGGCGGTTCTCGACGGCATCGTCGGCGTGGTCGAGGAGA
TCACCGAGCGCGGCGAGGACTGCTTCGAGGTGCGACTCGCCCTGTCGACCGCCACCATCGGCGGCGATGCCGGTCAGCTT
TTCAACATGCTGTTTGGCAACACCTCGCTGCAAGACGACACCGTCTTGCTTGATATCGATCTGCCCGACGATCTTCTGGC
CAGCTTCGGCGGGCCCAATATCGGCGCGGCCGGCCTGCGCGCCCGGGTTGGGGCTTCGGCCGATCGGGCGCTGACCTGTT
CGGCGCTCAAGCCCCAGGGACTGCCGCCCGACCGTCTGGCCGATCTGGCGCGGCGCATGGCGCTGGGCGGCCTGGATTTC
ATCAAGGACGATCACGGCATGGCCGATCAGGCCTATGCGCCCTTCGCCTCGCGGGTCGGCGCGGTGGCCGCGGCCGTCGA
CGAGGTCAACCGCCAGACCGGCGGCCAGACCCGCTACCTGCCCAGCCTGTCGGGCCACCTTGATCAGTTGCGTAGCCAAG
TGCGCACCGGGCTTGACCATGGGATCGATACCTTCCTGATCGCGCCGATGATCGTTGGCCCTTCGACCTTTCACGCGGTG
GTCCGCGAATTTCCCGGGGCGGCCTTCTTCGCCCATCCCACCCTGGCCGGACCGTCGCGCATCGCCCCGCCGGCCCATTT
CGGCAAGCTGTTCCGCCTGCTTGGCGCCGATGCGGTGATTTTTCCCAATTCGGGCGGCCGCTTTGGCTATTCCCGCGACA
CCTGCCAAGCGGTGGCCGAGGCGGCGCTTGGCCCCTGGGGCGGCCTGCATGCCAGCCTGCCGGTGCCGGCCGGCGGCATG
AGCCTTGCCCGCGTTCCCGAAATGATCGCGACCTATGGCCCCGATGTCATCGTGCTGATCGGTGGCAACCTGCTTGAAGC
CCGCGACCGCCTGACCGAAGAAACCGCCGCCTTCGTCGCCTCGGTGGCCGGGGCCGCAAGCCGAGGCTGCGGGTTGGCGC
CGTAG

Upstream 100 bases:

>100_bases
CCGTTCACCCGATATTTCCCATCTGGATCGGAGCGTTCTTGCGAATTCTCCACAAGCGTTCTGATGATCGGACCCTTCGG
CGGGCCGCGGGAGACATCGC

Downstream 100 bases:

>100_bases
AGAATAAAGCGAAGCCTCGTCCCACTCTGGTCAAGGTCGCCAAGGGATTTGGTCCACGCTAGAAAAAGGTCAGCGTTTTG
ACCTCAACTCGCTTTCCATA

Product: ribulose 1,5-bisphosphate carboxylase large subunit

Products: NA

Alternate protein names: RuBisCO-like protein [H]

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MTDRLRATYRVKATAASIEARAKGIAVEQSVEMPLSAIDDPAVLDGIVGVVEEITERGEDCFEVRLALSTATIGGDAGQL
FNMLFGNTSLQDDTVLLDIDLPDDLLASFGGPNIGAAGLRARVGASADRALTCSALKPQGLPPDRLADLARRMALGGLDF
IKDDHGMADQAYAPFASRVGAVAAAVDEVNRQTGGQTRYLPSLSGHLDQLRSQVRTGLDHGIDTFLIAPMIVGPSTFHAV
VREFPGAAFFAHPTLAGPSRIAPPAHFGKLFRLLGADAVIFPNSGGRFGYSRDTCQAVAEAALGPWGGLHASLPVPAGGM
SLARVPEMIATYGPDVIVLIGGNLLEARDRLTEETAAFVASVAGAASRGCGLAP

Sequences:

>Translated_374_residues
MTDRLRATYRVKATAASIEARAKGIAVEQSVEMPLSAIDDPAVLDGIVGVVEEITERGEDCFEVRLALSTATIGGDAGQL
FNMLFGNTSLQDDTVLLDIDLPDDLLASFGGPNIGAAGLRARVGASADRALTCSALKPQGLPPDRLADLARRMALGGLDF
IKDDHGMADQAYAPFASRVGAVAAAVDEVNRQTGGQTRYLPSLSGHLDQLRSQVRTGLDHGIDTFLIAPMIVGPSTFHAV
VREFPGAAFFAHPTLAGPSRIAPPAHFGKLFRLLGADAVIFPNSGGRFGYSRDTCQAVAEAALGPWGGLHASLPVPAGGM
SLARVPEMIATYGPDVIVLIGGNLLEARDRLTEETAAFVASVAGAASRGCGLAP
>Mature_373_residues
TDRLRATYRVKATAASIEARAKGIAVEQSVEMPLSAIDDPAVLDGIVGVVEEITERGEDCFEVRLALSTATIGGDAGQLF
NMLFGNTSLQDDTVLLDIDLPDDLLASFGGPNIGAAGLRARVGASADRALTCSALKPQGLPPDRLADLARRMALGGLDFI
KDDHGMADQAYAPFASRVGAVAAAVDEVNRQTGGQTRYLPSLSGHLDQLRSQVRTGLDHGIDTFLIAPMIVGPSTFHAVV
REFPGAAFFAHPTLAGPSRIAPPAHFGKLFRLLGADAVIFPNSGGRFGYSRDTCQAVAEAALGPWGGLHASLPVPAGGMS
LARVPEMIATYGPDVIVLIGGNLLEARDRLTEETAAFVASVAGAASRGCGLAP

Specific function: Unknown. Probably does not have RuBisCO activity [H]

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000685
- InterPro:   IPR017443 [H]

Pfam domain/function: PF00016 RuBisCO_large [H]

EC number: NA

Molecular weight: Translated: 38881; Mature: 38749

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRLRATYRVKATAASIEARAKGIAVEQSVEMPLSAIDDPAVLDGIVGVVEEITERGED
CCCCCCEEEEEEHHHHHHHHHHCCCEEHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCH
CFEVRLALSTATIGGDAGQLFNMLFGNTSLQDDTVLLDIDLPDDLLASFGGPNIGAAGLR
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHH
ARVGASADRALTCSALKPQGLPPDRLADLARRMALGGLDFIKDDHGMADQAYAPFASRVG
HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHH
AVAAAVDEVNRQTGGQTRYLPSLSGHLDQLRSQVRTGLDHGIDTFLIAPMIVGPSTFHAV
HHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
VREFPGAAFFAHPTLAGPSRIAPPAHFGKLFRLLGADAVIFPNSGGRFGYSRDTCQAVAE
HHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
AALGPWGGLHASLPVPAGGMSLARVPEMIATYGPDVIVLIGGNLLEARDRLTEETAAFVA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
SVAGAASRGCGLAP
HHHHHHHCCCCCCC
>Mature Secondary Structure 
TDRLRATYRVKATAASIEARAKGIAVEQSVEMPLSAIDDPAVLDGIVGVVEEITERGED
CCCCCEEEEEEHHHHHHHHHHCCCEEHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCH
CFEVRLALSTATIGGDAGQLFNMLFGNTSLQDDTVLLDIDLPDDLLASFGGPNIGAAGLR
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHCCCCCCCHHHHH
ARVGASADRALTCSALKPQGLPPDRLADLARRMALGGLDFIKDDHGMADQAYAPFASRVG
HHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHH
AVAAAVDEVNRQTGGQTRYLPSLSGHLDQLRSQVRTGLDHGIDTFLIAPMIVGPSTFHAV
HHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHH
VREFPGAAFFAHPTLAGPSRIAPPAHFGKLFRLLGADAVIFPNSGGRFGYSRDTCQAVAE
HHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHH
AALGPWGGLHASLPVPAGGMSLARVPEMIATYGPDVIVLIGGNLLEARDRLTEETAAFVA
HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHH
SVAGAASRGCGLAP
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA