| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is oppD [H]
Identifier: 83593255
GI number: 83593255
Start: 2224868
End: 2225698
Strand: Direct
Name: oppD [H]
Synonym: Rru_A1920
Alternate gene names: 83593255
Gene position: 2224868-2225698 (Clockwise)
Preceding gene: 83593254
Following gene: 83593256
Centisome position: 51.11
GC content: 66.55
Gene sequence:
>831_bases ATGAGCGAACCTCCCCTGATCGACGTCGATGGCCTGAACGTCTCCTTCTCCTCCGACAAGGGCACCGTTCATGCCGTGCG CGATGTCAGCTTCACCCTGGGCCGCGAAAAGCTGGCGATCGTTGGTGAATCCGGCTCGGGCAAATCCCAGACCGGGCGGG CCATCCTTGGCCTGACCCCGGGCAAGGTCAGCGCCCGGCGCATGAGCTTCCACGATATCGACCTGCGCGACCTGTCGGCG CGCGGCTGGCGGTCGATCCGCGGCAAGCGCATCGGCATGGTGATGCAAGATCCCAAATACTCGCTGAACCCGGTGATGAC CATCGGCGAGCAACTGATGGAGGCCGCCCGTCCCTTGGCCGACCTCAAGAGCGCCCGCCTGCGGTCGATGGAGATGCTCG AAGCCGTGCGCATCCGCGATCCCGAGCGGGTGTTCCGCGCTTGGCCGCACGAGCTGTCGGGCGGCATGGGCCAGCGGGCG ATGATCGCCATGATGCTGCTGCCCGAGCCCGAGGTGCTGATCGCCGACGAACCGACCTCGGCCCTTGATGTCACCGTGCG CCTTCAGGTGCTGGCGATCCTGGATGATCTGGTGCGCAAGCGCGACATGGGGCTGATCTTCATCAGCCATGACCTCAATC TGGTGCGGACCTTTTCCGACCGGGTGCTGATCATGGTCGGCGGCCGCATCGTCGAAACCCTGGCGGCCTCGGCCCTGGAA GAGGCCCGCCATCCCTATACCCGGGGGCTGCTGGCCTGCGTTCCCGATCCCGATCACCCGCGCGAGCGCTTGGCGACCCT GGTGCGCGACCCCGCCTGGACGGAACAGTGA
Upstream 100 bases:
>100_bases CTGCACCTATCCCGGCATCGCCATCTGCATCGTTAGCCTGGGCTTCAATCTGCTTGGCGACGGTCTGCGCGATGTCCTTG ATCCCAAGCGGTCTTAAACG
Downstream 100 bases:
>100_bases TGACACACGCCCCGATGATCGAGGTTAACAATCTGGCGGTGGCCTTTGGCGACGGCAAGCGCGTGGTCCGCGCCGTCCGC GCTGTCTCCTTCCGAGTCGA
Product: ABC transporter protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MSEPPLIDVDGLNVSFSSDKGTVHAVRDVSFTLGREKLAIVGESGSGKSQTGRAILGLTPGKVSARRMSFHDIDLRDLSA RGWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAARPLADLKSARLRSMEMLEAVRIRDPERVFRAWPHELSGGMGQRA MIAMMLLPEPEVLIADEPTSALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVETLAASALE EARHPYTRGLLACVPDPDHPRERLATLVRDPAWTEQ
Sequences:
>Translated_276_residues MSEPPLIDVDGLNVSFSSDKGTVHAVRDVSFTLGREKLAIVGESGSGKSQTGRAILGLTPGKVSARRMSFHDIDLRDLSA RGWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAARPLADLKSARLRSMEMLEAVRIRDPERVFRAWPHELSGGMGQRA MIAMMLLPEPEVLIADEPTSALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVETLAASALE EARHPYTRGLLACVPDPDHPRERLATLVRDPAWTEQ >Mature_275_residues SEPPLIDVDGLNVSFSSDKGTVHAVRDVSFTLGREKLAIVGESGSGKSQTGRAILGLTPGKVSARRMSFHDIDLRDLSAR GWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAARPLADLKSARLRSMEMLEAVRIRDPERVFRAWPHELSGGMGQRAM IAMMLLPEPEVLIADEPTSALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVETLAASALEE ARHPYTRGLLACVPDPDHPRERLATLVRDPAWTEQ
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=241, Percent_Identity=25.7261410788382, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI9955963, Length=229, Percent_Identity=32.3144104803493, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789963, Length=268, Percent_Identity=42.5373134328358, Blast_Score=211, Evalue=3e-56, Organism=Escherichia coli, GI145693107, Length=274, Percent_Identity=43.7956204379562, Blast_Score=204, Evalue=4e-54, Organism=Escherichia coli, GI48994883, Length=272, Percent_Identity=42.2794117647059, Blast_Score=200, Evalue=7e-53, Organism=Escherichia coli, GI1787759, Length=271, Percent_Identity=40.590405904059, Blast_Score=193, Evalue=1e-50, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=41.1538461538462, Blast_Score=179, Evalue=1e-46, Organism=Escherichia coli, GI1787548, Length=263, Percent_Identity=36.1216730038023, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI1787500, Length=276, Percent_Identity=39.4927536231884, Blast_Score=158, Evalue=4e-40, Organism=Escherichia coli, GI1789962, Length=274, Percent_Identity=36.4963503649635, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1789890, Length=246, Percent_Identity=36.5853658536585, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1787758, Length=246, Percent_Identity=37.3983739837398, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=34.2307692307692, Blast_Score=114, Evalue=8e-27, Organism=Escherichia coli, GI1787547, Length=256, Percent_Identity=32.421875, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1789891, Length=239, Percent_Identity=35.9832635983264, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1787089, Length=250, Percent_Identity=30.4, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787370, Length=253, Percent_Identity=30.0395256916996, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789672, Length=255, Percent_Identity=30.9803921568627, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=32.7659574468085, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1789032, Length=213, Percent_Identity=34.2723004694836, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789991, Length=230, Percent_Identity=30.8695652173913, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788761, Length=254, Percent_Identity=29.1338582677165, Blast_Score=85, Evalue=6e-18, Organism=Escherichia coli, GI87081791, Length=249, Percent_Identity=30.1204819277108, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI87081834, Length=236, Percent_Identity=32.2033898305085, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI87081709, Length=266, Percent_Identity=27.0676691729323, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786872, Length=199, Percent_Identity=32.6633165829146, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=30.9734513274336, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787105, Length=230, Percent_Identity=31.7391304347826, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI48994943, Length=238, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786398, Length=250, Percent_Identity=28.4, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788165, Length=227, Percent_Identity=30.3964757709251, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1787712, Length=239, Percent_Identity=31.7991631799163, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1788644, Length=152, Percent_Identity=36.8421052631579, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87082267, Length=196, Percent_Identity=30.1020408163265, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786703, Length=238, Percent_Identity=30.2521008403361, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786319, Length=224, Percent_Identity=29.0178571428571, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790525, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1790739, Length=261, Percent_Identity=28.3524904214559, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789873, Length=213, Percent_Identity=29.5774647887324, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787041, Length=228, Percent_Identity=25.4385964912281, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788472, Length=215, Percent_Identity=25.5813953488372, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788450, Length=213, Percent_Identity=26.7605633802817, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787792, Length=220, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786345, Length=80, Percent_Identity=37.5, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1789586, Length=253, Percent_Identity=28.0632411067194, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786803, Length=80, Percent_Identity=37.5, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1786253, Length=203, Percent_Identity=28.0788177339901, Blast_Score=61, Evalue=9e-11, Organism=Escherichia coli, GI48995001, Length=221, Percent_Identity=29.4117647058824, Blast_Score=61, Evalue=1e-10, Organism=Caenorhabditis elegans, GI115534520, Length=232, Percent_Identity=31.0344827586207, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI193202349, Length=224, Percent_Identity=27.6785714285714, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI193208177, Length=218, Percent_Identity=27.5229357798165, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24641565, Length=237, Percent_Identity=31.2236286919831, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI85726357, Length=215, Percent_Identity=28.8372093023256, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30609; Mature: 30478
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPPLIDVDGLNVSFSSDKGTVHAVRDVSFTLGREKLAIVGESGSGKSQTGRAILGLTP CCCCCEEEECCCEEEECCCCCCEEEEEHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECC GKVSARRMSFHDIDLRDLSARGWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAARPLA CCCCHHEEEECCCCHHHCCCCHHHHHCCCEECEEEECCCCCCCHHHHHHHHHHHHHCCHH DLKSARLRSMEMLEAVRIRDPERVFRAWPHELSGGMGQRAMIAMMLLPEPEVLIADEPTS HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCCHHHEEEEECCCCCEEEECCCCC ALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVETLAASALE CEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEEECCHHHHHHHHHHHH EARHPYTRGLLACVPDPDHPRERLATLVRDPAWTEQ HHCCCHHCCEEEECCCCCCHHHHHHHHHCCCCCCCC >Mature Secondary Structure SEPPLIDVDGLNVSFSSDKGTVHAVRDVSFTLGREKLAIVGESGSGKSQTGRAILGLTP CCCCEEEECCCEEEECCCCCCEEEEEHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECC GKVSARRMSFHDIDLRDLSARGWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAARPLA CCCCHHEEEECCCCHHHCCCCHHHHHCCCEECEEEECCCCCCCHHHHHHHHHHHHHCCHH DLKSARLRSMEMLEAVRIRDPERVFRAWPHELSGGMGQRAMIAMMLLPEPEVLIADEPTS HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHCCCCCCHHHEEEEECCCCCEEEECCCCC ALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVETLAASALE CEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEEECCHHHHHHHHHHHH EARHPYTRGLLACVPDPDHPRERLATLVRDPAWTEQ HHCCCHHCCEEEECCCCCCHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]