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The map label for this gene is ddpC [H]

Identifier: 83593254

GI number: 83593254

Start: 2223932

End: 2224864

Strand: Direct

Name: ddpC [H]

Synonym: Rru_A1919

Alternate gene names: 83593254

Gene position: 2223932-2224864 (Clockwise)

Preceding gene: 83593253

Following gene: 83593255

Centisome position: 51.09

GC content: 68.6

Gene sequence:

>933_bases
ATGGCCTCCTCTCCCCCCCGCGCCCCGCGCCCCGCGCGCGCCCCCTGGGTCCTCTGGCTGCTCAGCGACTCCCCCGCCTC
GCGGCTTCAGGCCCGCCTCGGCCGCTTCTATTCCGGCTGGCTGGTGTTCATCCGCAATCCCTTGGCGGTCATCGGTCTGG
CGATCTTTTTATGTCTGGTGATCCTGGCGACCTTCGCGCCGTGGATCGCCCCCCATGATCCGCTGTTTGGCACGCTCTCA
GAGCGTCTGTTGCCGCCCAGCGCCGGCCATTGGCTGGGTACCGACCAGCAGGGCCGCGATATCTGGAGCCGCATCGTCTT
TGGCTCGCGCACCACGCTGATGATCATCTTCCTGGTCGCCATCACCGCCGCCCCGGTCGGGCTGTTGATCGGCACCACGG
CGGGCTTCGTCGGCGGCATCGTCGAAGCCGCCCTCATGCGGCTGACCGACGCCTTTCTCGCCTTTCCCAAGCTGATCCTG
GCCCTGGCCTTCGCCGCCGCCCTGGGGGCCGGCCTGGAAAACGCCGTGCTGGCCATCGCCCTGACCGCCTGGCCGCCCTA
TGCCCGCATCGCCCGCGCCGAAACCCTGGCGGTGCGCCGCACCGATTTCGTCGCGGCGGCGCGGATGTGCGGCTCGTCGC
CGCTGCGCATCCTGATCGGCCAGATCATGCCGATGTGCATCCCCTCGCTGGTCGTGCGCGTCTCGCTCGATATGGCCGGC
GTCATCCTGATCGCCGCCGGCCTCGGCTTCCTTGGCCTCGGCGTCGCCCCGCCCCAACCCGAATGGGGGGCGATGGTTTC
GGAGGGCCGCAGCCAGATCCTGGCCCAATGGTGGGTCTGCACCTATCCCGGCATCGCCATCTGCATCGTTAGCCTGGGCT
TCAATCTGCTTGGCGACGGTCTGCGCGATGTCCTTGATCCCAAGCGGTCTTAA

Upstream 100 bases:

>100_bases
CGGCGGTGATGGGCGGCACCATCGTGGTTGGTGTCATCTTCATCGTCATCAATATGCTGACCGATGTCGCCTATCGTTTC
CTCGATCCAAGGTCCCGCTG

Downstream 100 bases:

>100_bases
ACGATGAGCGAACCTCCCCTGATCGACGTCGATGGCCTGAACGTCTCCTTCTCCTCCGACAAGGGCACCGTTCATGCCGT
GCGCGATGTCAGCTTCACCC

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MASSPPRAPRPARAPWVLWLLSDSPASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLVILATFAPWIAPHDPLFGTLS
ERLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIGTTAGFVGGIVEAALMRLTDAFLAFPKLIL
ALAFAAALGAGLENAVLAIALTAWPPYARIARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAG
VILIAAGLGFLGLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLDPKRS

Sequences:

>Translated_310_residues
MASSPPRAPRPARAPWVLWLLSDSPASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLVILATFAPWIAPHDPLFGTLS
ERLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIGTTAGFVGGIVEAALMRLTDAFLAFPKLIL
ALAFAAALGAGLENAVLAIALTAWPPYARIARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAG
VILIAAGLGFLGLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLDPKRS
>Mature_309_residues
ASSPPRAPRPARAPWVLWLLSDSPASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLVILATFAPWIAPHDPLFGTLSE
RLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIGTTAGFVGGIVEAALMRLTDAFLAFPKLILA
LAFAAALGAGLENAVLAIALTAWPPYARIARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGV
ILIAAGLGFLGLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLDPKRS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=291, Percent_Identity=43.6426116838488, Blast_Score=248, Evalue=3e-67,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=38.8278388278388, Blast_Score=202, Evalue=2e-53,
Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=41.9753086419753, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=42.5454545454545, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787498, Length=268, Percent_Identity=32.8358208955224, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787549, Length=275, Percent_Identity=36.3636363636364, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=25.9911894273128, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33068; Mature: 32937

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSPPRAPRPARAPWVLWLLSDSPASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLV
CCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ILATFAPWIAPHDPLFGTLSERLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVA
HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
ITAAPVGLLIGTTAGFVGGIVEAALMRLTDAFLAFPKLILALAFAAALGAGLENAVLAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEE
LTAWPPYARIARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAG
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILIAAGLGFLGLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDG
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LRDVLDPKRS
HHHHCCCCCC
>Mature Secondary Structure 
ASSPPRAPRPARAPWVLWLLSDSPASRLQARLGRFYSGWLVFIRNPLAVIGLAIFLCLV
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
ILATFAPWIAPHDPLFGTLSERLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVA
HHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHH
ITAAPVGLLIGTTAGFVGGIVEAALMRLTDAFLAFPKLILALAFAAALGAGLENAVLAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEE
LTAWPPYARIARAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAG
EECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VILIAAGLGFLGLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDG
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LRDVLDPKRS
HHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]