| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is yfjG [C]
Identifier: 83593211
GI number: 83593211
Start: 2173689
End: 2174132
Strand: Reverse
Name: yfjG [C]
Synonym: Rru_A1876
Alternate gene names: 83593211
Gene position: 2174132-2173689 (Counterclockwise)
Preceding gene: 83593212
Following gene: 83593209
Centisome position: 49.95
GC content: 56.31
Gene sequence:
>444_bases ATGCCCACACACGCCGAGAAACGGTTCTTACCTTACCAGCCCGAACAAATGTACGATCTGGTCGCCGATATCGAAAGTTA TCCGCGCTTTCTGCCGTGGTGCTTGGCATCAAGGATCAAGAAGCGGGAGGGCGATGTTGTGTGGGCCGATCTGGTGATCG GCTTCAAGATGGTGCGCGAGCGCTTCACCTCGCGCGTCGAGCTTGATCCCAAGCACAAGATCAGCGTCACCTATGCCGAA GGTCCGTTCAAATACTTGAACAACCATTGGGTTTTCGATCCGGGCGAGAACGGCGGGGTGATGATCGATTTCTATGTGGA TTTCGAATTCAAGTCGCCGCTTTTGCAAAAGATCATCGGCGCCTTGTTCAGCGAGGCGGTCCGCCTGATGGTCTCCTCGT TCGAGCGCCGCGCCGAACAGCTTTACGGCGCCAAGCGGCCCTGA
Upstream 100 bases:
>100_bases CGTCGCCGCTCACCCGCTCCTCCCACCATGCGGACCGCGATTTCGAGGACCTGCGCAAGGCCCGACAGGACGCCGCCGCC ACCAAGTGATTCCCTGATCA
Downstream 100 bases:
>100_bases TCGCGCCCCCTCCCGTCAGCGCCCCGGCCTTGGTCGCGGCGGCGACGGTCTTGGTTGTCGGGGGCGCCGCCCGTCGACCG GGAGGGTCCGGGGGCGCGGG
Product: cyclase/dehydrase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MPTHAEKRFLPYQPEQMYDLVADIESYPRFLPWCLASRIKKREGDVVWADLVIGFKMVRERFTSRVELDPKHKISVTYAE GPFKYLNNHWVFDPGENGGVMIDFYVDFEFKSPLLQKIIGALFSEAVRLMVSSFERRAEQLYGAKRP
Sequences:
>Translated_147_residues MPTHAEKRFLPYQPEQMYDLVADIESYPRFLPWCLASRIKKREGDVVWADLVIGFKMVRERFTSRVELDPKHKISVTYAE GPFKYLNNHWVFDPGENGGVMIDFYVDFEFKSPLLQKIIGALFSEAVRLMVSSFERRAEQLYGAKRP >Mature_146_residues PTHAEKRFLPYQPEQMYDLVADIESYPRFLPWCLASRIKKREGDVVWADLVIGFKMVRERFTSRVELDPKHKISVTYAEG PFKYLNNHWVFDPGENGGVMIDFYVDFEFKSPLLQKIIGALFSEAVRLMVSSFERRAEQLYGAKRP
Specific function: Unknown
COG id: COG2867
COG function: function code I; Oligoketide cyclase/lipid transport protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0083 family [H]
Homologues:
Organism=Homo sapiens, GI13376737, Length=144, Percent_Identity=38.1944444444444, Blast_Score=103, Evalue=5e-23, Organism=Homo sapiens, GI151101384, Length=144, Percent_Identity=32.6388888888889, Blast_Score=92, Evalue=2e-19, Organism=Homo sapiens, GI151101386, Length=144, Percent_Identity=32.6388888888889, Blast_Score=92, Evalue=2e-19, Organism=Escherichia coli, GI1788972, Length=145, Percent_Identity=35.8620689655172, Blast_Score=105, Evalue=9e-25, Organism=Caenorhabditis elegans, GI115532702, Length=146, Percent_Identity=30.8219178082192, Blast_Score=77, Evalue=3e-15, Organism=Drosophila melanogaster, GI221330016, Length=144, Percent_Identity=30.5555555555556, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI24586033, Length=144, Percent_Identity=30.5555555555556, Blast_Score=76, Evalue=9e-15, Organism=Drosophila melanogaster, GI20129725, Length=144, Percent_Identity=30.5555555555556, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005031 [H]
Pfam domain/function: PF03364 Polyketide_cyc [H]
EC number: NA
Molecular weight: Translated: 17240; Mature: 17109
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTHAEKRFLPYQPEQMYDLVADIESYPRFLPWCLASRIKKREGDVVWADLVIGFKMVRE CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHH RFTSRVELDPKHKISVTYAEGPFKYLNNHWVFDPGENGGVMIDFYVDFEFKSPLLQKIIG HHHHCCCCCCCCEEEEEECCCCHHHHCCCEEECCCCCCCEEEEEEEECCCCCHHHHHHHH ALFSEAVRLMVSSFERRAEQLYGAKRP HHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PTHAEKRFLPYQPEQMYDLVADIESYPRFLPWCLASRIKKREGDVVWADLVIGFKMVRE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHH RFTSRVELDPKHKISVTYAEGPFKYLNNHWVFDPGENGGVMIDFYVDFEFKSPLLQKIIG HHHHCCCCCCCCEEEEEECCCCHHHHCCCEEECCCCCCCEEEEEEEECCCCCHHHHHHHH ALFSEAVRLMVSSFERRAEQLYGAKRP HHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]