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The map label for this gene is pomA [H]

Identifier: 83593141

GI number: 83593141

Start: 2104057

End: 2104857

Strand: Direct

Name: pomA [H]

Synonym: Rru_A1806

Alternate gene names: 83593141

Gene position: 2104057-2104857 (Clockwise)

Preceding gene: 83593139

Following gene: 83593142

Centisome position: 48.34

GC content: 59.93

Gene sequence:

>801_bases
ATGTCACTCGCGACGATTCTCGGCGTACTCTTCGGCTTCGGTCTGTTCTGCCTCTCCGTCATCCTGTCCACCGATAATTA
TCTCTTATTCCTCAAGGGAGAGAGCTTTATCATGGTGGTCGGCGGAACGCTGGCCGCGGCGTTCGTCTCCTTCGAACCCC
GCTATGTGGTCAGCGCGCTGCGCAGCATGGTGGCCATTCTTTTCAATCACGAGGTCTCGCGCTCGATCCTGACCCATGAA
GTGGGCCGCGTCATCCGCTGGGGCTATATCATCCAGAAAAACGGCCTGCCCGGCCTCGAGGCCGATGCCCAGAAAGTTCG
CAAGCAAGATCGATTCCTCAGCTATGGCCTTGATCTGGTGGTCACCGGCTATACGGGAACCGAAGTGCGCGAAATTCTGG
CCAATACGGTTGAGAACACCTTCCAAAGGCAGGTGGTTCCGGCGGAAATCCTGCGCAACATGGGTGGAACCGCCCCGGCC
TTCGGCATGATCGGCACCCTGGTCGGCCTGATCATCATGTTCGACAGCATGGGCAGCAATCCGGGCAGCATGGGCGCCGG
CCTCGCCGTCGCCCTGACCGCCACGCTGTATGGCCTGTTGTCGGCCCGCCTGCTCTTCCTGCCCGCCGCCTCCAAGGTCA
AGCAGCGCGAAGAGCTGATCCGCTATCGCAATTATCTTCTGGCCGAGGGCCTCGCCCTTCTCGCCGAGCGCAAAAGCCCG
CGCTACATCCAAGACCGGATGAACAGCTACCTTGATCCGTCGATCCACTTCAGCATCGATCGGGTCCGCATCAAGGAGTA
A

Upstream 100 bases:

>100_bases
GACGGAATTCCGTATAAACTGCCCTCAAGCGGCAAGCAGTCGCCCCGGTCTCCTGGAAGAATGTTTCCAGAGCGTGATAA
TCTCGAATTGGCTTTCGCCC

Downstream 100 bases:

>100_bases
GCGAAGATGATGGGTCAAAGCGGCGGCGGTCGCCACCATGACGCCCCGGAGCACGACGATACCGACGCCTGGCTGATCAG
CTTCGCCGATATGTCGTGCC

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSALRSMVAILFNHEVSRSILTHE
VGRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDLVVTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPA
FGMIGTLVGLIIMFDSMGSNPGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQREELIRYRNYLLAEGLALLAERKSP
RYIQDRMNSYLDPSIHFSIDRVRIKE

Sequences:

>Translated_266_residues
MSLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSALRSMVAILFNHEVSRSILTHE
VGRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDLVVTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPA
FGMIGTLVGLIIMFDSMGSNPGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQREELIRYRNYLLAEGLALLAERKSP
RYIQDRMNSYLDPSIHFSIDRVRIKE
>Mature_265_residues
SLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSALRSMVAILFNHEVSRSILTHEV
GRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDLVVTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPAF
GMIGTLVGLIIMFDSMGSNPGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQREELIRYRNYLLAEGLALLAERKSPR
YIQDRMNSYLDPSIHFSIDRVRIKE

Specific function: PomA and PomB comprise the stator element of the flagellar motor complex. Required for rotation of the flagellar motor. Probable transmembrane proton channel [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell inner membrane; Multi- pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 29321; Mature: 29190

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSAL
CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECHHHHHHHHHCCHHHHHHHH
RSMVAILFNHEVSRSILTHEVGRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
VTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPAFGMIGTLVGLIIMFDSMGSN
EECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQREELIRYRNYLLAEGLALLAERKSP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYIQDRMNSYLDPSIHFSIDRVRIKE
HHHHHHHHHHCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SLATILGVLFGFGLFCLSVILSTDNYLLFLKGESFIMVVGGTLAAAFVSFEPRYVVSAL
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECHHHHHHHHHCCHHHHHHHH
RSMVAILFNHEVSRSILTHEVGRVIRWGYIIQKNGLPGLEADAQKVRKQDRFLSYGLDLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
VTGYTGTEVREILANTVENTFQRQVVPAEILRNMGGTAPAFGMIGTLVGLIIMFDSMGSN
EECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
PGSMGAGLAVALTATLYGLLSARLLFLPAASKVKQREELIRYRNYLLAEGLALLAERKSP
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
RYIQDRMNSYLDPSIHFSIDRVRIKE
HHHHHHHHHHCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9260952 [H]