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The map label for this gene is ybiH [H]

Identifier: 83593129

GI number: 83593129

Start: 2086330

End: 2087019

Strand: Reverse

Name: ybiH [H]

Synonym: Rru_A1794

Alternate gene names: 83593129

Gene position: 2087019-2086330 (Counterclockwise)

Preceding gene: 83593130

Following gene: 83593128

Centisome position: 47.95

GC content: 66.38

Gene sequence:

>690_bases
ATGGCCGACCTTCGGAAATCCCGTGGCGACCAAGGCGAGGTGACGCGCGAAAAGCTGTTGACGGCGGCTTTGGACCTGTT
TGGCCGCCGGGGGTTCGATGGCACCTCGACGCGGGCTTTGGCCGATGCCGCCGGGGTCAATCTTCAGGCCATTCCCTATT
ATTTTGGTGGCAAGGAGGGGCTTTACCGCGAAACCGCCGGCGCCATCGCCGACGCCATCGCCGCCCGACTGGCCGACAGA
CGGGCGCGTATCGCCGCCCGCCTTGATGAGGCGACCGCGATGGGGCGGCCGATCGATCCCGCGGAGGCCCGGGTTCTGCT
GACCGACGTGGTTCAGACGATGGCCGGGCTTTTCGTAAGCAAGGAGTCCGAGCCTTGGGCGCGCTTCCTGATCCGCGAGC
AGATGGAACCAACCGAAGCCTTTCGCCAGATTTACGGCACGGTGATGAAGCCCGTTCTCGATCTGGCGGGGCGATTGGTC
GGCGTTCTGCTGGACGAGGATCCGGTATCGGAGTCGGTCCGTCTGCGCACGGTATCGCTGATGGGCGGCGTTCTCGTGTT
CCGCGTCGCCCATGCCGCCGCCCTGACCCACCTTGACTGGCCGACCATCGGCGCCCGCGAGGCCGCCGTGGTCGCCGATC
TGGCCGGGGATCTTGTCGCATCGATCGGGCCAAGGGAGAGGCGGGAATGA

Upstream 100 bases:

>100_bases
GGCTTCGCCTCTGGCTTTGGCGGCGAAAAATTCAGTCGATTGATTCATTCGGTCGAATGAATTACATTGATCCCCAGGAC
AGCAAGGGAGTGGTTTGACG

Downstream 100 bases:

>100_bases
AAAAGCGACTGCTGGGCGGCGTTCTTGGTCTGGTGATCTTGGGCGGCGGGCTCGCCGTTTGGGGGGACATCCCTAGGCGT
CTGGGCTGGGGCGGGGAGGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MADLRKSRGDQGEVTREKLLTAALDLFGRRGFDGTSTRALADAAGVNLQAIPYYFGGKEGLYRETAGAIADAIAARLADR
RARIAARLDEATAMGRPIDPAEARVLLTDVVQTMAGLFVSKESEPWARFLIREQMEPTEAFRQIYGTVMKPVLDLAGRLV
GVLLDEDPVSESVRLRTVSLMGGVLVFRVAHAAALTHLDWPTIGAREAAVVADLAGDLVASIGPRERRE

Sequences:

>Translated_229_residues
MADLRKSRGDQGEVTREKLLTAALDLFGRRGFDGTSTRALADAAGVNLQAIPYYFGGKEGLYRETAGAIADAIAARLADR
RARIAARLDEATAMGRPIDPAEARVLLTDVVQTMAGLFVSKESEPWARFLIREQMEPTEAFRQIYGTVMKPVLDLAGRLV
GVLLDEDPVSESVRLRTVSLMGGVLVFRVAHAAALTHLDWPTIGAREAAVVADLAGDLVASIGPRERRE
>Mature_228_residues
ADLRKSRGDQGEVTREKLLTAALDLFGRRGFDGTSTRALADAAGVNLQAIPYYFGGKEGLYRETAGAIADAIAARLADRR
ARIAARLDEATAMGRPIDPAEARVLLTDVVQTMAGLFVSKESEPWARFLIREQMEPTEAFRQIYGTVMKPVLDLAGRLVG
VLLDEDPVSESVRLRTVSLMGGVLVFRVAHAAALTHLDWPTIGAREAAVVADLAGDLVASIGPRERRE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=190, Percent_Identity=33.6842105263158, Blast_Score=91, Evalue=6e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24772; Mature: 24641

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLRKSRGDQGEVTREKLLTAALDLFGRRGFDGTSTRALADAAGVNLQAIPYYFGGKEG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECEEECCCCC
LYRETAGAIADAIAARLADRRARIAARLDEATAMGRPIDPAEARVLLTDVVQTMAGLFVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
KESEPWARFLIREQMEPTEAFRQIYGTVMKPVLDLAGRLVGVLLDEDPVSESVRLRTVSL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
MGGVLVFRVAHAAALTHLDWPTIGAREAAVVADLAGDLVASIGPRERRE
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ADLRKSRGDQGEVTREKLLTAALDLFGRRGFDGTSTRALADAAGVNLQAIPYYFGGKEG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECEEECCCCC
LYRETAGAIADAIAARLADRRARIAARLDEATAMGRPIDPAEARVLLTDVVQTMAGLFVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
KESEPWARFLIREQMEPTEAFRQIYGTVMKPVLDLAGRLVGVLLDEDPVSESVRLRTVSL
CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
MGGVLVFRVAHAAALTHLDWPTIGAREAAVVADLAGDLVASIGPRERRE
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]