| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is 83593130
Identifier: 83593130
GI number: 83593130
Start: 2087134
End: 2088048
Strand: Reverse
Name: 83593130
Synonym: Rru_A1795
Alternate gene names: NA
Gene position: 2088048-2087134 (Counterclockwise)
Preceding gene: 83593131
Following gene: 83593129
Centisome position: 47.97
GC content: 67.65
Gene sequence:
>915_bases GTGCTGTTTCTTGAGTTCGCGGCGGCCTGGGATGTCTATCTGGCCGCCGCGCCCTTCCTTCCGTCCCGGCCGGCTCCGCC CATTGGCGGCTGTCGTCGCATCGAAGGCGTTGGCGCCGTCGCCGACGCCTTCGATCTGATCGTGCTCGACGCCTATGGCG TTCTGCACGAGGGAGCCGAGCCCTATCCCGCCGCGCTGGAGGCTTTTGCCGCCTTGCGCGCGCGCGGCAAGGCGGTTTGT GTGGTGACCAATGCGGTCACCCATGCCCCGGGCGATGTCGCGGCGCGGCTGACTGCCCTGGGCTTTCCCCTTGATGCCGG CGAAGTGGTTTCGGGGCGGTCCTTGCTGCCCGATCTGCTGGCCGGGGAACAGGATCAGGGGAGCGGGATCATGGTGTTGG GCAGCCACACCGCCCCGGTACAGGAGCGCTTCCCCCAAGCCATCGCCCAGGATTGGACGGCCGAGGCCTTGGATCGGGCG CGCGGCTTCTTGCTGATCGACACCAACGGCTGGATGGACGACGAGCCCGAAAGCCGCTTGGGCGCCAGCCTGCGGGCCAA TCCGCGGCCGCTGATCGTCTGCAACCCGGATGTCACCTGTCCCTTCCTCGGCAAGCTGAGCTACGAGCCGGGCTATTTCG CCTTTCGTCTGGCGGCCGAGATCCCCGATCTGCCGCTGCGCTTCCTTGGCAAGCCCTATGGCGCCATCTATGACCGCGTG GCCGCGCGCTTCCCCGGCATCGCCCGTGAGCGCATCCTTGCGGTTGGCGACAGTCCGCATACGGATGTTCTGGGGGCGAG AAGTGCTGGAATGGCGGCGCTTCTGGTCGAGAGCGGCCTGTTTCGCGGCCGCGACACCGGGCGTCTGCTGGCGGAGTGCG CCATCCTTCCCGATTTCATCGCCCCCCATCTCTGA
Upstream 100 bases:
>100_bases CGAGGTGGTCGAAGAGCAGCGCGAGCGGCGGGCCGAGTATGAAAGCCAGCGCGACAAGGTGCGTGACGCCCTGACCCGCA TCGCCTGATCGGAGCGCGTG
Downstream 100 bases:
>100_bases GCCTGTTTGCCGGCGGCTTCGCCTCTGGCTTTGGCGGCGAAAAATTCAGTCGATTGATTCATTCGGTCGAATGAATTACA TTGATCCCCAGGACAGCAAG
Product: HAD family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MLFLEFAAAWDVYLAAAPFLPSRPAPPIGGCRRIEGVGAVADAFDLIVLDAYGVLHEGAEPYPAALEAFAALRARGKAVC VVTNAVTHAPGDVAARLTALGFPLDAGEVVSGRSLLPDLLAGEQDQGSGIMVLGSHTAPVQERFPQAIAQDWTAEALDRA RGFLLIDTNGWMDDEPESRLGASLRANPRPLIVCNPDVTCPFLGKLSYEPGYFAFRLAAEIPDLPLRFLGKPYGAIYDRV AARFPGIARERILAVGDSPHTDVLGARSAGMAALLVESGLFRGRDTGRLLAECAILPDFIAPHL
Sequences:
>Translated_304_residues MLFLEFAAAWDVYLAAAPFLPSRPAPPIGGCRRIEGVGAVADAFDLIVLDAYGVLHEGAEPYPAALEAFAALRARGKAVC VVTNAVTHAPGDVAARLTALGFPLDAGEVVSGRSLLPDLLAGEQDQGSGIMVLGSHTAPVQERFPQAIAQDWTAEALDRA RGFLLIDTNGWMDDEPESRLGASLRANPRPLIVCNPDVTCPFLGKLSYEPGYFAFRLAAEIPDLPLRFLGKPYGAIYDRV AARFPGIARERILAVGDSPHTDVLGARSAGMAALLVESGLFRGRDTGRLLAECAILPDFIAPHL >Mature_304_residues MLFLEFAAAWDVYLAAAPFLPSRPAPPIGGCRRIEGVGAVADAFDLIVLDAYGVLHEGAEPYPAALEAFAALRARGKAVC VVTNAVTHAPGDVAARLTALGFPLDAGEVVSGRSLLPDLLAGEQDQGSGIMVLGSHTAPVQERFPQAIAQDWTAEALDRA RGFLLIDTNGWMDDEPESRLGASLRANPRPLIVCNPDVTCPFLGKLSYEPGYFAFRLAAEIPDLPLRFLGKPYGAIYDRV AARFPGIARERILAVGDSPHTDVLGARSAGMAALLVESGLFRGRDTGRLLAECAILPDFIAPHL
Specific function: Unknown
COG id: COG0647
COG function: function code G; Predicted sugar phosphatases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 nudix hydrolase domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006357 - InterPro: IPR023215 - InterPro: IPR020476 - InterPro: IPR020084 - InterPro: IPR000086 - InterPro: IPR015797 [H]
Pfam domain/function: PF00702 Hydrolase; PF00293 NUDIX [H]
EC number: NA
Molecular weight: Translated: 32281; Mature: 32281
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFLEFAAAWDVYLAAAPFLPSRPAPPIGGCRRIEGVGAVADAFDLIVLDAYGVLHEGAE CEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCC PYPAALEAFAALRARGKAVCVVTNAVTHAPGDVAARLTALGFPLDAGEVVSGRSLLPDLL CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH AGEQDQGSGIMVLGSHTAPVQERFPQAIAQDWTAEALDRARGFLLIDTNGWMDDEPESRL CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHH GASLRANPRPLIVCNPDVTCPFLGKLSYEPGYFAFRLAAEIPDLPLRFLGKPYGAIYDRV CCCCCCCCCEEEEECCCCCCCHHCCCCCCCCCEEEEEECCCCCCCHHHHCCCHHHHHHHH AARFPGIARERILAVGDSPHTDVLGARSAGMAALLVESGLFRGRDTGRLLAECAILPDFI HHHCCCCCHHHEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH APHL CCCC >Mature Secondary Structure MLFLEFAAAWDVYLAAAPFLPSRPAPPIGGCRRIEGVGAVADAFDLIVLDAYGVLHEGAE CEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCC PYPAALEAFAALRARGKAVCVVTNAVTHAPGDVAARLTALGFPLDAGEVVSGRSLLPDLL CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH AGEQDQGSGIMVLGSHTAPVQERFPQAIAQDWTAEALDRARGFLLIDTNGWMDDEPESRL CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHH GASLRANPRPLIVCNPDVTCPFLGKLSYEPGYFAFRLAAEIPDLPLRFLGKPYGAIYDRV CCCCCCCCCEEEEECCCCCCCHHCCCCCCCCCEEEEEECCCCCCCHHHHCCCHHHHHHHH AARFPGIARERILAVGDSPHTDVLGARSAGMAALLVESGLFRGRDTGRLLAECAILPDFI HHHCCCCCHHHEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH APHL CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8631946 [H]