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The map label for this gene is ywhC [H]

Identifier: 83593111

GI number: 83593111

Start: 2067306

End: 2067992

Strand: Reverse

Name: ywhC [H]

Synonym: Rru_A1776

Alternate gene names: 83593111

Gene position: 2067992-2067306 (Counterclockwise)

Preceding gene: 83593112

Following gene: 83593110

Centisome position: 47.51

GC content: 66.52

Gene sequence:

>687_bases
ATGGGTGACATGATCTTTGGCATTCTGACCTGGCTTCCCGGGCTGATCCTGGCCATCACCCTGCACGAGGCGGCGCATGG
CTATGTCGCCTCGGCTTTGGGCGACCAGACGGCGCGGCTGCTGGGGCGGGTGACGCTCAATCCCATCCGCCATGTCGATC
CCTTCGGCACCCTGGTGCTGCCGGGGCTGCTGTTTCTGGTCGGCGCCCCCTTCCTGTTCGGCTGGGCCAAGCCGGTTCCC
GTCGATTATCGCAATCTGCGCCACCCTAAGCGCGATATGGCCTGGGTGGCGCTGGCCGGCCCGGGGATGAATATCTTCCT
GGCGGTGGTTTCCGCCGCCGCCTTGCATGGGGCGTTGCTGCTGCCCGATCCGGCCGCCGACTGGCTGATCACCACCTTGC
AGAAATCGGTGCTGATCAACTGCGTGCTGGCGGTGTTCAACATGATCCCGGTGCCGCCCTTGGATGGCGGCCGGGTGCTG
GTCGGCATCTTGCCGATGCGGGCGGCGGTGGTGGTCGCCCGCATGGAACGGGTGGGGATGCTGGCGCTGATCGGGGTGAT
CTTCCTGCTTCCCCTGGCCTTGAGCCAGTTCGGGGTGGATTTCGATCCGTTCTCGCGGATCATCGGCCCGGTGGTGCGCG
CCCTGCTGGGCGCCGTCTACACCACGGCCGGCATCCCGCTGTTCTGA

Upstream 100 bases:

>100_bases
GCTGGCAGGGGGCGAAGGAGCGCCTTGGCCATCCCACCGCCGATTACGATGCCGGGGCCGATCTGGCACGCCTTCTCGAA
CTGATGGGCTGAGCGCGCCG

Downstream 100 bases:

>100_bases
GCGGGCGGGGCAGGGCCGTCATGGCCAGCGACGCCTTCCCAGAGGACCCCGCGCCCCCGGCGGCGGGGCGGAGCGCCGAC
GATCTGGTCCTCGATCTCGA

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MGDMIFGILTWLPGLILAITLHEAAHGYVASALGDQTARLLGRVTLNPIRHVDPFGTLVLPGLLFLVGAPFLFGWAKPVP
VDYRNLRHPKRDMAWVALAGPGMNIFLAVVSAAALHGALLLPDPAADWLITTLQKSVLINCVLAVFNMIPVPPLDGGRVL
VGILPMRAAVVVARMERVGMLALIGVIFLLPLALSQFGVDFDPFSRIIGPVVRALLGAVYTTAGIPLF

Sequences:

>Translated_228_residues
MGDMIFGILTWLPGLILAITLHEAAHGYVASALGDQTARLLGRVTLNPIRHVDPFGTLVLPGLLFLVGAPFLFGWAKPVP
VDYRNLRHPKRDMAWVALAGPGMNIFLAVVSAAALHGALLLPDPAADWLITTLQKSVLINCVLAVFNMIPVPPLDGGRVL
VGILPMRAAVVVARMERVGMLALIGVIFLLPLALSQFGVDFDPFSRIIGPVVRALLGAVYTTAGIPLF
>Mature_227_residues
GDMIFGILTWLPGLILAITLHEAAHGYVASALGDQTARLLGRVTLNPIRHVDPFGTLVLPGLLFLVGAPFLFGWAKPVPV
DYRNLRHPKRDMAWVALAGPGMNIFLAVVSAAALHGALLLPDPAADWLITTLQKSVLINCVLAVFNMIPVPPLDGGRVLV
GILPMRAAVVVARMERVGMLALIGVIFLLPLALSQFGVDFDPFSRIIGPVVRALLGAVYTTAGIPLF

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24321; Mature: 24189

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDMIFGILTWLPGLILAITLHEAAHGYVASALGDQTARLLGRVTLNPIRHVDPFGTLVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHH
PGLLFLVGAPFLFGWAKPVPVDYRNLRHPKRDMAWVALAGPGMNIFLAVVSAAALHGALL
HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHCEEEEEECCCHHHHHHHHHHHHHHCEEE
LPDPAADWLITTLQKSVLINCVLAVFNMIPVPPLDGGRVLVGILPMRAAVVVARMERVGM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LALIGVIFLLPLALSQFGVDFDPFSRIIGPVVRALLGAVYTTAGIPLF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GDMIFGILTWLPGLILAITLHEAAHGYVASALGDQTARLLGRVTLNPIRHVDPFGTLVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHH
PGLLFLVGAPFLFGWAKPVPVDYRNLRHPKRDMAWVALAGPGMNIFLAVVSAAALHGALL
HHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHCEEEEEECCCHHHHHHHHHHHHHHCEEE
LPDPAADWLITTLQKSVLINCVLAVFNMIPVPPLDGGRVLVGILPMRAAVVVARMERVGM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LALIGVIFLLPLALSQFGVDFDPFSRIIGPVVRALLGAVYTTAGIPLF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]