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The map label for this gene is secD [H]

Identifier: 83593099

GI number: 83593099

Start: 2056240

End: 2057706

Strand: Reverse

Name: secD [H]

Synonym: Rru_A1764

Alternate gene names: 83593099

Gene position: 2057706-2056240 (Counterclockwise)

Preceding gene: 83593100

Following gene: 83593098

Centisome position: 47.27

GC content: 69.39

Gene sequence:

>1467_bases
ATGCCCGCCTTGTTCAGTCTGTGGAAAGCCATTCCGGTGATCCTGGTCGTTCTGGCCGGGATCACCTTTTCTTTAGCCAA
TGTGGTTCCCGGGGCGGGCGAGGGTGGCTTGCGCTGGTGGCGACCGCTTTCCCTGGGGCTTGACCTCAAGGGCGGCAGCA
CCTTCCTGATCGACCTTGACGCGCCGGCCCTGGTCCATGAGACCCAGGTGGCGCTGGCCGCCAGCGCCGGCGCCGCCCTG
CGCGGCGAACGCATCGGTGGAGCGGCCAATCTGGGCGAGGACGGGGCGGTGGTCGTCGATATCGCCGATGCGGGCCAGCG
CGCCGCGGCGCTGCGGCTGTTGCGCGGGCTTGAAGCCGGAACCGAGGCGGAGATCACCCCCGCCGGGGCCATCCGCCTGA
CCTTTACCGCCATCGCCCAGGCCGAGCGCACCGACCGCATGGTCGCCCGCGGCCTGGGAGTGCTGCGCCAGCGTCTGCGT
GAGGCGGGCCTCAGCGAAATCCGTCTGGAACGGCGCTCCGACCGCCGCATCCTGGTCGCCTTGCCCGGATTGGACGACTC
GGAGCGGGTGAGGGACCTGCTATGGCGGCCGGCGCGGTTGTCGATCCGGGCGGCGAATGGCGAGGGGGGAACGATCGACG
GCGATCGGCTGACGAGCGCCCAGGCGACGGTTCAGAACGGCAAACCTTTGATCAGCCTGCGCTTTGATGGCGTCGGCGAG
CGACGCATCATCCAGATGCGCGGCGGCGAGGGCGGCGAGCGCGGACTTGAGGCGACGATTGACGGCGAGGCGGTGGCCGT
CCGCCTTCTGCGCCAGCCCGGATCGGGGGGCATCGGCCTTTTGCTCGATGGCGCCTTTTCCACCCGCGCCGCCCAGGATC
TGGCCCTGATGCTGCGCGTTGGCGCCCTGCCCACGCCCTTTCGGATCGTCGAGGAACGCACCGTCGGCCCCAGCCTGGGC
GCCGATCGCGTCGCCGCCGGCGCCTTGGCCAGCGCGGCGGGGGCTTTGGCGGTGACCGTCTTCCTGATCGCCGTCTATGG
TTTGTTCGGGGTTTTCGCCACCATCGCCCTTGGTCTTAATTTCTGCCTGCTGTTTGGCATGCTATCGGGGCTGGGGGCGA
CGCTGACCTTGCCCGGCATCGCCGGCATCGCCCTGACCATCGGCATGGCGGTGGACGCCAGCGTGCTGATCTTCGAGCGC
ATCGGCGAGGAGGCCCGCGCCGGGCTGGCGGTGGACGAGGCGCTGCGGGCGGGCTTCGGCAAGGCCTTTTCGGCCGTGCT
GGACGCCAATATCCTGACGCTGGGCGTTGGCGCCTTGCTATTTTGGCTGGGCGGCGGACCGGTGCGGGGATTTGCCGTCA
CCCTGACGCTGGGGGCCGTGAGCGCCCTGTTCACGGCGATGCTGCTCAACCGACTGATCGTCGCGCTCTGGCTGCGTCTG
GCGCGGCCGAAAACCATTCCCCTTTAA

Upstream 100 bases:

>100_bases
CCGCCTTTTCCACTCTAGATCGAAGGATCCGCGCCACCGGCGTTTCGTCGCGCGCGGTTTGATCTAGCGGGTTGGTTTTT
CCGTTTGTCGGAGACCTGGG

Downstream 100 bases:

>100_bases
AGGGTCCGCCCCATCATGCCGCGTCCCTTCGCCCGACTGACCGCCGACTTCCACTATGATTTCCTTGTCAGCCGCGCGCG
GGTGATGGCGGCTTCGGCGG

Product: SecD export membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MPALFSLWKAIPVILVVLAGITFSLANVVPGAGEGGLRWWRPLSLGLDLKGGSTFLIDLDAPALVHETQVALAASAGAAL
RGERIGGAANLGEDGAVVVDIADAGQRAAALRLLRGLEAGTEAEITPAGAIRLTFTAIAQAERTDRMVARGLGVLRQRLR
EAGLSEIRLERRSDRRILVALPGLDDSERVRDLLWRPARLSIRAANGEGGTIDGDRLTSAQATVQNGKPLISLRFDGVGE
RRIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGLLLDGAFSTRAAQDLALMLRVGALPTPFRIVEERTVGPSLG
ADRVAAGALASAAGALAVTVFLIAVYGLFGVFATIALGLNFCLLFGMLSGLGATLTLPGIAGIALTIGMAVDASVLIFER
IGEEARAGLAVDEALRAGFGKAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRL
ARPKTIPL

Sequences:

>Translated_488_residues
MPALFSLWKAIPVILVVLAGITFSLANVVPGAGEGGLRWWRPLSLGLDLKGGSTFLIDLDAPALVHETQVALAASAGAAL
RGERIGGAANLGEDGAVVVDIADAGQRAAALRLLRGLEAGTEAEITPAGAIRLTFTAIAQAERTDRMVARGLGVLRQRLR
EAGLSEIRLERRSDRRILVALPGLDDSERVRDLLWRPARLSIRAANGEGGTIDGDRLTSAQATVQNGKPLISLRFDGVGE
RRIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGLLLDGAFSTRAAQDLALMLRVGALPTPFRIVEERTVGPSLG
ADRVAAGALASAAGALAVTVFLIAVYGLFGVFATIALGLNFCLLFGMLSGLGATLTLPGIAGIALTIGMAVDASVLIFER
IGEEARAGLAVDEALRAGFGKAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRL
ARPKTIPL
>Mature_487_residues
PALFSLWKAIPVILVVLAGITFSLANVVPGAGEGGLRWWRPLSLGLDLKGGSTFLIDLDAPALVHETQVALAASAGAALR
GERIGGAANLGEDGAVVVDIADAGQRAAALRLLRGLEAGTEAEITPAGAIRLTFTAIAQAERTDRMVARGLGVLRQRLRE
AGLSEIRLERRSDRRILVALPGLDDSERVRDLLWRPARLSIRAANGEGGTIDGDRLTSAQATVQNGKPLISLRFDGVGER
RIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGLLLDGAFSTRAAQDLALMLRVGALPTPFRIVEERTVGPSLGA
DRVAAGALASAAGALAVTVFLIAVYGLFGVFATIALGLNFCLLFGMLSGLGATLTLPGIAGIALTIGMAVDASVLIFERI
GEEARAGLAVDEALRAGFGKAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRLA
RPKTIPL

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=494, Percent_Identity=31.1740890688259, Blast_Score=197, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 50609; Mature: 50478

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALFSLWKAIPVILVVLAGITFSLANVVPGAGEGGLRWWRPLSLGLDLKGGSTFLIDLD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEECCCCEEEEECC
APALVHETQVALAASAGAALRGERIGGAANLGEDGAVVVDIADAGQRAAALRLLRGLEAG
CCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCC
TEAEITPAGAIRLTFTAIAQAERTDRMVARGLGVLRQRLREAGLSEIRLERRSDRRILVA
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEE
LPGLDDSERVRDLLWRPARLSIRAANGEGGTIDGDRLTSAQATVQNGKPLISLRFDGVGE
ECCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCC
RRIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGLLLDGAFSTRAAQDLALMLRV
EEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
GALPTPFRIVEERTVGPSLGADRVAAGALASAAGALAVTVFLIAVYGLFGVFATIALGLN
CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCLLFGMLSGLGATLTLPGIAGIALTIGMAVDASVLIFERIGEEARAGLAVDEALRAGFG
HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCHHHHHHHHHCHHHHCCCHHHHHHHHCHH
KAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRL
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ARPKTIPL
CCCCCCCC
>Mature Secondary Structure 
PALFSLWKAIPVILVVLAGITFSLANVVPGAGEGGLRWWRPLSLGLDLKGGSTFLIDLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECEEECCCCEEEEECC
APALVHETQVALAASAGAALRGERIGGAANLGEDGAVVVDIADAGQRAAALRLLRGLEAG
CCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCC
TEAEITPAGAIRLTFTAIAQAERTDRMVARGLGVLRQRLREAGLSEIRLERRSDRRILVA
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEE
LPGLDDSERVRDLLWRPARLSIRAANGEGGTIDGDRLTSAQATVQNGKPLISLRFDGVGE
ECCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCC
RRIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGLLLDGAFSTRAAQDLALMLRV
EEEEEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHH
GALPTPFRIVEERTVGPSLGADRVAAGALASAAGALAVTVFLIAVYGLFGVFATIALGLN
CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FCLLFGMLSGLGATLTLPGIAGIALTIGMAVDASVLIFERIGEEARAGLAVDEALRAGFG
HHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCHHHHHHHHHCHHHHCCCHHHHHHHHCHH
KAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRL
HHHHHHHHCHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
ARPKTIPL
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA